Variant report

Variant	rs11236447
Chromosome Location	chr11:75231425-75231426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75201395..75203649-chr11:75230289..75232256,2	MCF-7	breast:
2	chr11:75109826..75112702-chr11:75229707..75232364,3	K562	blood:
3	chr11:75220615..75223491-chr11:75231021..75233361,2	MCF-7	breast:
4	chr11:75230382..75233335-chr11:75236668..75238207,2	MCF-7	breast:
5	chr11:75224068..75229006-chr11:75230364..75234823,7	K562	blood:
6	chr11:75156609..75158880-chr11:75228671..75231631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11236445	0.97[ASN][1000 genomes]
rs11236451	0.83[ASN][1000 genomes]
rs4575302	0.84[EUR][1000 genomes]
rs60079896	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61895075	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75216200-75233600	Genic enhancers	Fetal Intestine Small	intestine
2	chr11:75217800-75234800	Weak transcription	Ovary	ovary
3	chr11:75219000-75231800	Weak transcription	Right Atrium	heart
4	chr11:75220400-75235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:75227800-75234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:75227800-75234400	Enhancers	Fetal Intestine Large	intestine
7	chr11:75228600-75232800	Enhancers	Fetal Muscle Leg	muscle
8	chr11:75228600-75234400	Weak transcription	Lung	lung
9	chr11:75228800-75231800	Enhancers	Fetal Muscle Trunk	muscle
10	chr11:75228800-75232200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:75228800-75234800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:75229000-75233600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:75229000-75234400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:75229400-75231800	Enhancers	HSMM	muscle
15	chr11:75229400-75233800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:75229400-75234200	Enhancers	HSMMtube	muscle
17	chr11:75229600-75235200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:75230000-75232600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:75230200-75232000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:75230200-75232200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:75230200-75233400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:75230200-75233400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:75230200-75233400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:75230400-75231600	Weak transcription	Spleen	Spleen
25	chr11:75230400-75232000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:75230400-75233400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:75230400-75233800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:75230400-75233800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:75230400-75234000	Weak transcription	GM12878-XiMat	blood
30	chr11:75230600-75231600	Weak transcription	Placenta	Placenta
31	chr11:75230600-75232800	Genic enhancers	HepG2	liver
32	chr11:75230600-75233600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:75230800-75232400	Enhancers	Psoas Muscle	Psoas
34	chr11:75230800-75235400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:75231000-75232400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr11:75231000-75232600	Enhancers	Liver	Liver
37	chr11:75231000-75234200	Enhancers	Adipose Nuclei	Adipose
38	chr11:75231200-75232600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:75231400-75231600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:75231400-75231600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:75231400-75231800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:75231400-75232200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr11:75231400-75232200	Enhancers	Aorta	Aorta
44	chr11:75231400-75232400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:75231400-75234400	Enhancers	Pancreas	Pancrea

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