Variant report

Variant	rs11237399
Chromosome Location	chr11:77832727-77832728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77820759..77824131-chr11:77830018..77833366,4	K562	blood:
2	chr11:77820759..77824131-chr11:77830018..77833366,3	K562	blood:

Variant related genes	Relation type
ENSG00000159063	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73501867	1.00[AMR][1000 genomes]
rs73501887	1.00[AMR][1000 genomes]
rs73501892	1.00[AMR][1000 genomes]
rs73503564	1.00[AMR][1000 genomes]
rs73503567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv1047928	chr11:77825275-77877369	ZNF genes & repeats Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77791200-77849800	Weak transcription	Gastric	stomach
2	chr11:77791600-77842600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:77801800-77849000	Weak transcription	Pancreas	Pancrea
4	chr11:77802000-77849800	Weak transcription	Esophagus	oesophagus
5	chr11:77804800-77849000	Weak transcription	Psoas Muscle	Psoas
6	chr11:77808400-77834400	Weak transcription	HMEC	breast
7	chr11:77810400-77837000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:77811800-77849800	Weak transcription	Right Ventricle	heart
9	chr11:77812000-77848400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:77812200-77833600	Weak transcription	Small Intestine	intestine
11	chr11:77812200-77837200	Weak transcription	Colonic Mucosa	Colon
12	chr11:77812200-77837400	Weak transcription	HUVEC	blood vessel
13	chr11:77812200-77849600	Weak transcription	Brain Substantia Nigra	brain
14	chr11:77812400-77843200	Weak transcription	Fetal Heart	heart
15	chr11:77815800-77835800	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:77820200-77833800	Weak transcription	HSMMtube	muscle
17	chr11:77821600-77835000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:77822400-77833400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:77822400-77835200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:77822400-77837400	Weak transcription	NHDF-Ad	bronchial
21	chr11:77822400-77850000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:77822600-77834600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:77822600-77845400	Weak transcription	Fetal Brain Female	brain
24	chr11:77822600-77849600	Weak transcription	Fetal Kidney	kidney
25	chr11:77822600-77849600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:77822800-77833800	Weak transcription	Brain Angular Gyrus	brain
27	chr11:77822800-77835800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:77822800-77849600	Weak transcription	Spleen	Spleen
29	chr11:77823000-77834600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:77823400-77849600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:77823400-77850200	Weak transcription	Aorta	Aorta
32	chr11:77823600-77845600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:77823600-77849800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:77823800-77833000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:77823800-77833200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:77823800-77833200	Weak transcription	Brain Anterior Caudate	brain
37	chr11:77823800-77846200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:77823800-77847200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:77823800-77849600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:77823800-77849800	Weak transcription	Lung	lung
41	chr11:77823800-77850000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:77824000-77833200	Weak transcription	NH-A	brain
43	chr11:77824000-77833400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:77824000-77833400	Weak transcription	Adipose Nuclei	Adipose
45	chr11:77824000-77834600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:77824000-77837200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:77824000-77847400	Weak transcription	Brain Germinal Matrix	brain
48	chr11:77824000-77849400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:77824000-77849600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:77824200-77849600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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