Variant report

Variant	rs73503564
Chromosome Location	chr11:77711483-77711484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77711405..77713114-chr11:77713722..77716590,3	K562	blood:
2	chr11:77710921..77711860-chr11:77756921..77757828,2	K562	blood:
3	chr11:77529109..77532020-chr11:77711379..77713954,3	MCF-7	breast:
4	chr11:77710676..77711910-chr11:77756818..77757801,6	MCF-7	breast:
5	chr11:77705384..77708206-chr11:77709854..77711861,2	K562	blood:
6	chr11:77706148..77708206-chr11:77708508..77712088,3	K562	blood:
7	chr11:77530463..77532833-chr11:77709797..77712048,2	K562	blood:
8	chr11:77487226..77488107-chr11:77710812..77711578,2	MCF-7	breast:
9	chr11:77487200..77488007-chr11:77710887..77711898,5	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000048649	Chromatin interaction
ENSG00000149262	Chromatin interaction
ENSG00000151364	Chromatin interaction
ENSG00000087884	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11237399	1.00[AMR][1000 genomes]
rs60704733	1.00[AMR][1000 genomes]
rs73493813	1.00[AMR][1000 genomes]
rs73493836	1.00[AMR][1000 genomes]
rs73493884	1.00[AMR][1000 genomes]
rs73495954	1.00[AMR][1000 genomes]
rs73499843	1.00[AMR][1000 genomes]
rs73501867	1.00[AMR][1000 genomes]
rs73501887	1.00[AMR][1000 genomes]
rs73501892	1.00[AMR][1000 genomes]
rs73503567	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77706600-77713400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:77709400-77712400	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:77709600-77711600	Enhancers	Primary B cells from cord blood	blood
4	chr11:77710200-77711600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:77710800-77711600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:77711000-77711600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:77711000-77711600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:77711000-77711600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:77711000-77711600	Enhancers	Brain Germinal Matrix	brain
10	chr11:77711000-77711600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:77711000-77711600	Enhancers	Pancreas	Pancrea
12	chr11:77711000-77711600	Enhancers	Dnd41	blood
13	chr11:77711000-77711600	Enhancers	HepG2	liver
14	chr11:77711200-77711600	Enhancers	Brain Anterior Caudate	brain
15	chr11:77711200-77711800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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