Variant report

Variant	rs73499843
Chromosome Location	chr11:77602317-77602318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs56709311	1.00[AMR][1000 genomes]
rs57008614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57229097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57544945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58758035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60704733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493811	1.00[AFR][1000 genomes]
rs73493813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493884	1.00[AMR][1000 genomes]
rs73495954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501887	1.00[AMR][1000 genomes]
rs73501892	1.00[AMR][1000 genomes]
rs73503564	1.00[AMR][1000 genomes]
rs73503567	1.00[AMR][1000 genomes]
rs73506711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506724	1.00[AMR][1000 genomes]
rs73506730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508738	1.00[AFR][1000 genomes]
rs73508749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv555453	chr11:77577494-77618441	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv975954	chr11:77600915-77617903	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77577400-77630800	Weak transcription	Fetal Heart	heart
2	chr11:77579200-77625000	Weak transcription	HMEC	breast
3	chr11:77583400-77670600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:77583400-77690000	Weak transcription	Colonic Mucosa	Colon
5	chr11:77586600-77625000	Weak transcription	Stomach Mucosa	stomach
6	chr11:77587200-77617600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:77587800-77603800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:77588200-77614000	Weak transcription	Right Ventricle	heart
9	chr11:77591200-77605600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:77591800-77650400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:77592400-77602400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:77592800-77605400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:77592800-77690000	Weak transcription	Small Intestine	intestine
14	chr11:77593800-77625000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:77595400-77620000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:77595800-77671000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:77597400-77617400	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:77597400-77625000	Weak transcription	A549	lung
19	chr11:77597600-77603000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:77597600-77617400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:77597600-77629400	Weak transcription	Brain Germinal Matrix	brain
22	chr11:77597800-77602400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:77597800-77602400	Weak transcription	NH-A	brain
24	chr11:77597800-77603800	Weak transcription	NHLF	lung
25	chr11:77597800-77604000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:77597800-77605600	Weak transcription	Fetal Lung	lung
27	chr11:77597800-77609600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:77597800-77612200	Weak transcription	Brain Anterior Caudate	brain
29	chr11:77597800-77613600	Weak transcription	Fetal Intestine Large	intestine
30	chr11:77597800-77614000	Weak transcription	Lung	lung
31	chr11:77597800-77614000	Weak transcription	HSMMtube	muscle
32	chr11:77597800-77614200	Weak transcription	Brain Angular Gyrus	brain
33	chr11:77597800-77614200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:77597800-77614400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:77597800-77617400	Weak transcription	GM12878-XiMat	blood
36	chr11:77597800-77617600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:77597800-77617600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:77597800-77617800	Weak transcription	Fetal Kidney	kidney
39	chr11:77597800-77620000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:77597800-77624800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:77597800-77625000	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:77597800-77625000	Weak transcription	Pancreas	Pancrea
43	chr11:77597800-77625000	Weak transcription	NHDF-Ad	bronchial
44	chr11:77597800-77625200	Weak transcription	NHEK	skin
45	chr11:77597800-77625600	Weak transcription	HSMM	muscle
46	chr11:77597800-77629000	Weak transcription	Aorta	Aorta
47	chr11:77597800-77633800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:77597800-77644200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:77597800-77644400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:77597800-77669800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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