Variant report

Variant	rs73493811
Chromosome Location	chr11:77470377-77470378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77469026..77471018-chr11:77478256..77480233,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs57008614	1.00[AFR][1000 genomes]
rs57229097	1.00[AFR][1000 genomes]
rs57544945	1.00[AFR][1000 genomes]
rs58758035	1.00[AFR][1000 genomes]
rs59231807	1.00[AFR][1000 genomes]
rs59293034	1.00[AFR][1000 genomes]
rs60704733	1.00[AFR][1000 genomes]
rs61186004	1.00[AFR][1000 genomes]
rs73492001	1.00[AFR][1000 genomes]
rs73493813	1.00[AFR][1000 genomes]
rs73493836	1.00[AFR][1000 genomes]
rs73495954	1.00[AFR][1000 genomes]
rs73498844	0.86[AFR][1000 genomes]
rs73498854	1.00[AFR][1000 genomes]
rs73498869	1.00[AFR][1000 genomes]
rs73498882	1.00[AFR][1000 genomes]
rs73498884	1.00[AFR][1000 genomes]
rs73499843	1.00[AFR][1000 genomes]
rs73500729	1.00[AFR][1000 genomes]
rs73500735	1.00[AFR][1000 genomes]
rs73500750	1.00[AFR][1000 genomes]
rs73500752	1.00[AFR][1000 genomes]
rs73501867	1.00[AFR][1000 genomes]
rs73504713	1.00[AFR][1000 genomes]
rs73504734	1.00[AFR][1000 genomes]
rs73504765	1.00[AFR][1000 genomes]
rs73504777	1.00[AFR][1000 genomes]
rs73504800	1.00[AFR][1000 genomes]
rs73506711	1.00[AFR][1000 genomes]
rs73506717	1.00[AFR][1000 genomes]
rs73506730	1.00[AFR][1000 genomes]
rs73506734	1.00[AFR][1000 genomes]
rs73506737	1.00[AFR][1000 genomes]
rs73506741	1.00[AFR][1000 genomes]
rs73506742	1.00[AFR][1000 genomes]
rs73506754	1.00[AFR][1000 genomes]
rs73506778	1.00[AFR][1000 genomes]
rs73508705	1.00[AFR][1000 genomes]
rs73508715	1.00[AFR][1000 genomes]
rs73508720	1.00[AFR][1000 genomes]
rs73508738	1.00[AFR][1000 genomes]
rs73508749	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv976491	chr11:77459085-77487555	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77409600-77478200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:77410400-77477600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:77431600-77482400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:77436200-77473400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:77436200-77477000	Weak transcription	Colonic Mucosa	Colon
6	chr11:77436600-77473200	Weak transcription	NHDF-Ad	bronchial
7	chr11:77442400-77472600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:77442800-77474600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:77442800-77500200	Weak transcription	Pancreas	Pancrea
10	chr11:77443200-77473600	Weak transcription	Fetal Brain Female	brain
11	chr11:77443200-77500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:77445800-77476800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:77446200-77482400	Weak transcription	Spleen	Spleen
14	chr11:77446400-77474800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:77448800-77473200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:77449800-77474600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:77450600-77474600	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:77452000-77479400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:77452200-77473400	Weak transcription	Hela-S3	cervix
20	chr11:77452200-77481600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:77452600-77474600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:77453200-77473200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:77459000-77474600	Weak transcription	NHLF	lung
24	chr11:77459200-77472200	Weak transcription	Liver	Liver
25	chr11:77459200-77473200	Weak transcription	HSMM	muscle
26	chr11:77459200-77473400	Weak transcription	HMEC	breast
27	chr11:77459200-77474400	Weak transcription	NH-A	brain
28	chr11:77459400-77498200	Weak transcription	NHEK	skin
29	chr11:77460000-77495800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:77460200-77474600	Weak transcription	HUVEC	blood vessel
31	chr11:77460600-77474600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:77462200-77500200	Weak transcription	Gastric	stomach
33	chr11:77462800-77481200	Weak transcription	Right Ventricle	heart
34	chr11:77463600-77477600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:77463800-77471200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr11:77463800-77473200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:77463800-77474600	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
39	chr11:77464000-77474400	Weak transcription	Brain Anterior Caudate	brain
40	chr11:77464000-77474800	Weak transcription	Lung	lung
41	chr11:77464000-77480600	Weak transcription	Fetal Heart	heart
42	chr11:77464200-77473400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:77464400-77476200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:77464600-77474600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:77464600-77475000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:77464600-77475600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:77464600-77476200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:77464800-77475400	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:77464800-77475600	Strong transcription	Dnd41	blood
50	chr11:77465000-77473200	Weak transcription	Left Ventricle	heart

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