Variant report

Variant	rs60704733
Chromosome Location	chr11:77520873-77520874
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77520152..77525474-chr11:77528362..77532820,9	MCF-7	breast:
2	chr11:77519457..77522143-chr11:77529403..77531820,3	K562	blood:

Variant related genes	Relation type
ENSG00000087884	Chromatin interaction
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs56709311	1.00[AMR][1000 genomes]
rs57008614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57229097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57544945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58758035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59231807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493811	1.00[AFR][1000 genomes]
rs73493813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493884	1.00[AMR][1000 genomes]
rs73495954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500756	1.00[AMR][1000 genomes]
rs73500773	1.00[AMR][1000 genomes]
rs73501867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501887	1.00[AMR][1000 genomes]
rs73501892	1.00[AMR][1000 genomes]
rs73503564	1.00[AMR][1000 genomes]
rs73503567	1.00[AMR][1000 genomes]
rs73504713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504718	1.00[AMR][1000 genomes]
rs73504734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504744	1.00[AMR][1000 genomes]
rs73504765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506724	1.00[AMR][1000 genomes]
rs73506730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508738	1.00[AFR][1000 genomes]
rs73508749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77463800-77527000	Weak transcription	Aorta	Aorta
2	chr11:77475200-77527800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:77475400-77522000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:77475400-77529000	Weak transcription	NHLF	lung
5	chr11:77475400-77530000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:77475800-77522000	Weak transcription	Hela-S3	cervix
7	chr11:77482800-77525800	Weak transcription	Fetal Lung	lung
8	chr11:77487400-77522000	Weak transcription	Placenta	Placenta
9	chr11:77495800-77528200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:77496000-77530200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:77499000-77525600	Weak transcription	HMEC	breast
12	chr11:77501200-77525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:77501400-77521600	Weak transcription	Fetal Kidney	kidney
14	chr11:77501400-77526800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:77503400-77525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:77503600-77525000	Weak transcription	Ovary	ovary
17	chr11:77503600-77529600	Weak transcription	Right Ventricle	heart
18	chr11:77503800-77521200	Weak transcription	Fetal Thymus	thymus
19	chr11:77503800-77525800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:77504000-77521800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:77504000-77524400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:77504800-77524600	Weak transcription	Fetal Intestine Large	intestine
23	chr11:77504800-77525200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:77505000-77522200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:77505000-77524000	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:77505000-77528400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:77505200-77521600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:77505200-77524200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:77505400-77525800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:77505600-77521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:77506800-77528200	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:77508000-77527800	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:77509400-77528800	Weak transcription	Brain Germinal Matrix	brain
34	chr11:77509800-77530000	Weak transcription	NH-A	brain
35	chr11:77510000-77521600	Weak transcription	Thymus	Thymus
36	chr11:77510000-77524600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:77510800-77521200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr11:77511400-77526000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:77512000-77521000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:77512000-77521200	Weak transcription	Brain Anterior Caudate	brain
41	chr11:77512000-77521200	Weak transcription	Pancreas	Pancrea
42	chr11:77512000-77522000	Weak transcription	Adipose Nuclei	Adipose
43	chr11:77512000-77522400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:77512000-77522800	Weak transcription	Fetal Stomach	stomach
45	chr11:77512000-77524800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:77512000-77525800	Weak transcription	NHDF-Ad	bronchial
47	chr11:77512000-77529600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:77512200-77522000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:77512200-77529200	Weak transcription	Fetal Brain Female	brain
50	chr11:77512400-77521600	Weak transcription	Duodenum Mucosa	Duodenum

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