Variant report

Variant	rs73495954
Chromosome Location	chr11:77552612-77552613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56709311	1.00[AMR][1000 genomes]
rs57008614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57229097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57544945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58758035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59231807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59293034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60704733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493811	1.00[AFR][1000 genomes]
rs73493813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493884	1.00[AMR][1000 genomes]
rs73499843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501887	1.00[AMR][1000 genomes]
rs73501892	1.00[AMR][1000 genomes]
rs73503564	1.00[AMR][1000 genomes]
rs73503567	1.00[AMR][1000 genomes]
rs73504713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504718	1.00[AMR][1000 genomes]
rs73504734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504744	1.00[AMR][1000 genomes]
rs73504765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506724	1.00[AMR][1000 genomes]
rs73506730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508738	1.00[AFR][1000 genomes]
rs73508749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77533000-77553800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:77533000-77554000	Weak transcription	Brain Substantia Nigra	brain
3	chr11:77533000-77554200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:77533400-77553800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:77533400-77554000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:77533400-77565600	Weak transcription	Gastric	stomach
7	chr11:77533400-77565600	Weak transcription	Pancreas	Pancrea
8	chr11:77533600-77553000	Weak transcription	HUVEC	blood vessel
9	chr11:77534600-77555400	Weak transcription	Lung	lung
10	chr11:77535200-77552800	Weak transcription	Aorta	Aorta
11	chr11:77535200-77553800	Weak transcription	NHDF-Ad	bronchial
12	chr11:77535200-77554200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:77535200-77554400	Weak transcription	HSMM	muscle
14	chr11:77535400-77553400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:77535400-77553400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:77535400-77554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:77535400-77555000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:77535400-77565600	Weak transcription	HepG2	liver
19	chr11:77541600-77553800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:77544600-77555400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:77544600-77564400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:77544600-77565400	Weak transcription	Spleen	Spleen
23	chr11:77544800-77553400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:77544800-77554200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:77544800-77554200	Weak transcription	Dnd41	blood
26	chr11:77544800-77554400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:77544800-77564400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:77544800-77565400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:77545000-77554000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:77545000-77555400	Weak transcription	Fetal Kidney	kidney
31	chr11:77547200-77565800	Weak transcription	Fetal Heart	heart
32	chr11:77547600-77555200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:77548800-77582800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:77549000-77553400	Weak transcription	NH-A	brain
35	chr11:77549200-77552800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:77550000-77565600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:77550200-77553000	Weak transcription	Osteobl	bone
38	chr11:77550200-77553400	Weak transcription	Primary T cells from cord blood	blood
39	chr11:77550200-77554000	Weak transcription	Brain Anterior Caudate	brain
40	chr11:77550400-77554200	Weak transcription	HSMMtube	muscle
41	chr11:77550400-77557200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:77550800-77554200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:77550800-77564000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:77550800-77565400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:77551000-77555400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:77551200-77558400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:77551400-77565400	Weak transcription	Fetal Thymus	thymus
48	chr11:77551600-77553000	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr11:77551800-77556600	Strong transcription	Ovary	ovary
50	chr11:77552000-77553000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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