Variant report

Variant	rs11238526
Chromosome Location	chr10:43874641-43874642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43873117..43874743-chr10:43887091..43889680,2	MCF-7	breast:
2	chr10:43872575..43876095-chr10:43882284..43884232,3	MCF-7	breast:
3	chr10:43873108..43875014-chr10:43949897..43951449,2	MCF-7	breast:
4	chr10:43867647..43875264-chr10:43900659..43906151,11	MCF-7	breast:
5	chr10:43868968..43875759-chr10:43890269..43893335,11	MCF-7	breast:
6	chr10:43853521..43859723-chr10:43870896..43875408,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10899794	0.92[ASN][1000 genomes]
rs10899796	0.82[ASN][1000 genomes]
rs10899797	0.97[ASN][1000 genomes]
rs11238530	0.81[ASN][1000 genomes]
rs1126709	0.95[ASN][1000 genomes]
rs12257917	0.95[ASN][1000 genomes]
rs2247979	0.90[ASN][1000 genomes]
rs2247981	0.90[ASN][1000 genomes]
rs2250444	0.87[ASN][1000 genomes]
rs2252800	0.95[ASN][1000 genomes]
rs2255967	0.95[ASN][1000 genomes]
rs2261636	0.87[ASN][1000 genomes]
rs2265887	0.88[ASN][1000 genomes]
rs2265952	0.93[ASN][1000 genomes]
rs2265953	0.82[ASN][1000 genomes]
rs2460558	0.93[ASN][1000 genomes]
rs2492404	0.81[ASN][1000 genomes]
rs2492407	0.89[ASN][1000 genomes]
rs2819032	0.95[ASN][1000 genomes]
rs2819034	0.94[ASN][1000 genomes]
rs2946992	0.93[ASN][1000 genomes]
rs2999286	0.85[ASN][1000 genomes]
rs3000700	0.92[ASN][1000 genomes]
rs4948726	0.83[ASN][1000 genomes]
rs56059584	0.95[ASN][1000 genomes]
rs60739384	0.93[ASN][1000 genomes]
rs61859002	0.88[ASN][1000 genomes]
rs7070029	0.90[ASN][1000 genomes]
rs7088430	0.89[ASN][1000 genomes]
rs7905676	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
6	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43867200-43876200	Weak transcription	Hela-S3	cervix
3	chr10:43869000-43880400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:43869200-43882000	Weak transcription	Left Ventricle	heart
5	chr10:43869400-43880200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:43869800-43878600	Weak transcription	A549	lung
7	chr10:43870000-43881200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:43870000-43882000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:43870200-43881000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:43870200-43882000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:43870200-43882000	Weak transcription	Brain Substantia Nigra	brain
12	chr10:43870400-43880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:43870400-43881000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:43870400-43881600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:43870400-43882000	Weak transcription	Brain Angular Gyrus	brain
16	chr10:43871000-43880400	Weak transcription	Brain Anterior Caudate	brain
17	chr10:43871200-43881600	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:43871400-43880800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:43871600-43880000	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:43871800-43879600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:43872200-43880200	Weak transcription	Lung	lung
22	chr10:43872600-43881000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:43873200-43878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:43873200-43880200	Weak transcription	Gastric	stomach
25	chr10:43873200-43880600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:43873200-43881200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:43873200-43890200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:43873400-43878600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:43873400-43880800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:43873400-43881000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:43873400-43881000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:43873400-43881000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:43873400-43881200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:43873400-43881400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:43873400-43881800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:43873400-43882000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:43873400-43891000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:43873600-43878600	Weak transcription	Fetal Intestine Small	intestine
39	chr10:43873600-43878800	Weak transcription	Fetal Intestine Large	intestine
40	chr10:43873800-43878600	Weak transcription	Placenta	Placenta
41	chr10:43873800-43881000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:43873800-43881000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr10:43873800-43882000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:43873800-43882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:43874000-43876200	Weak transcription	K562	blood
46	chr10:43874400-43882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:43874600-43878600	Weak transcription	HepG2	liver

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