Variant report

Variant	rs60739384
Chromosome Location	chr10:43868029-43868030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43867647..43875264-chr10:43900659..43906151,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10899791	0.81[ASN][1000 genomes]
rs10899792	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10899793	0.81[ASN][1000 genomes]
rs10899794	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899797	0.90[ASN][1000 genomes]
rs11238525	0.82[ASN][1000 genomes]
rs11238526	0.93[ASN][1000 genomes]
rs1126709	0.88[ASN][1000 genomes]
rs12221341	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12257917	0.88[ASN][1000 genomes]
rs17153534	0.81[ASN][1000 genomes]
rs2243492	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2245413	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2245710	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2247979	0.83[ASN][1000 genomes]
rs2247981	0.83[ASN][1000 genomes]
rs2250444	0.80[ASN][1000 genomes]
rs2252800	0.88[ASN][1000 genomes]
rs2255967	0.88[ASN][1000 genomes]
rs2261636	0.80[ASN][1000 genomes]
rs2265887	0.81[ASN][1000 genomes]
rs2265952	0.86[ASN][1000 genomes]
rs2460535	0.94[EUR][1000 genomes]
rs2460558	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492407	0.82[ASN][1000 genomes]
rs2493659	0.95[EUR][1000 genomes]
rs2819032	0.88[ASN][1000 genomes]
rs2819034	0.87[ASN][1000 genomes]
rs2946992	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3000700	0.85[ASN][1000 genomes]
rs4648316	0.81[ASN][1000 genomes]
rs56059584	0.88[ASN][1000 genomes]
rs59383062	0.81[ASN][1000 genomes]
rs61859002	0.82[ASN][1000 genomes]
rs7070029	0.83[ASN][1000 genomes]
rs7088430	0.83[ASN][1000 genomes]
rs7905676	0.88[ASN][1000 genomes]
rs7912358	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7921001	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
8	nsv521283	chr10:43866528-43871998	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43861200-43872400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:43866400-43870400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:43867000-43868800	Enhancers	Brain Substantia Nigra	brain
5	chr10:43867200-43868200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:43867200-43870200	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:43867200-43876200	Weak transcription	Hela-S3	cervix
8	chr10:43867400-43868400	Weak transcription	Gastric	stomach
9	chr10:43867400-43868600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:43867600-43868400	Enhancers	Brain Angular Gyrus	brain
11	chr10:43867800-43868600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:43868000-43868200	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr10:43868000-43868200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:43868000-43868400	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr10:43868000-43869000	Enhancers	HSMMtube	muscle
16	chr10:43868000-43869200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:43868000-43869600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:43868000-43870200	Enhancers	Skeletal Muscle Male	skeletal muscle

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