Variant report

Variant	rs11238525
Chromosome Location	chr10:43865183-43865184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43633753..43635738-chr10:43863548..43866235,2	K562	blood:
2	chr10:43858596..43860755-chr10:43865023..43867031,2	K562	blood:
3	chr10:43862412..43865895-chr10:43866160..43868639,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150201	Chromatin interaction
ENSG00000169826	Chromatin interaction
ENSG00000273008	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10409	0.90[ASN][1000 genomes]
rs10466239	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899790	0.98[EUR][1000 genomes]
rs10899791	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899793	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899794	0.82[ASN][1000 genomes]
rs10899796	0.93[ASN][1000 genomes]
rs10899800	0.86[ASN][1000 genomes]
rs10899801	0.83[ASN][1000 genomes]
rs10899802	0.82[ASN][1000 genomes]
rs10899803	0.82[ASN][1000 genomes]
rs10899806	0.82[ASN][1000 genomes]
rs10899807	0.82[ASN][1000 genomes]
rs10899808	0.82[ASN][1000 genomes]
rs11238513	0.80[EUR][1000 genomes]
rs11238514	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11238530	0.92[ASN][1000 genomes]
rs11238532	0.90[ASN][1000 genomes]
rs11238536	0.90[ASN][1000 genomes]
rs11814409	0.83[ASN][1000 genomes]
rs12220230	0.90[ASN][1000 genomes]
rs12220528	0.90[ASN][1000 genomes]
rs12250140	0.90[ASN][1000 genomes]
rs12261855	0.90[ASN][1000 genomes]
rs13376803	0.90[ASN][1000 genomes]
rs17153534	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1879312	0.84[ASN][1000 genomes]
rs28865415	0.83[ASN][1000 genomes]
rs4627023	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4648316	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56198445	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57280597	0.92[EUR][1000 genomes]
rs59383062	0.98[ASN][1000 genomes]
rs60739384	0.82[ASN][1000 genomes]
rs7099802	0.90[ASN][1000 genomes]
rs7907179	0.90[ASN][1000 genomes]
rs7909500	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7921001	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43861200-43872400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:43863400-43866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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