Variant report

Variant	rs1879312
Chromosome Location	chr10:43845341-43845342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43842351..43846324-chr10:43890114..43894453,4	MCF-7	breast:
2	chr10:43842329..43845784-chr10:43890164..43894425,6	MCF-7	breast:
3	chr10:43844277..43845840-chr10:43851755..43853493,2	MCF-7	breast:
4	chr10:43842333..43853034-chr10:43900806..43908178,21	MCF-7	breast:
5	chr10:43844606..43847679-chr10:43848074..43851632,6	MCF-7	breast:
6	chr10:43843009..43845636-chr10:43903650..43906156,2	K562	blood:
7	chr10:43785328..43787796-chr10:43843270..43845965,2	MCF-7	breast:
8	chr10:43843916..43845531-chr10:43886417..43888525,2	MCF-7	breast:
9	chr10:43822305..43824647-chr10:43844072..43845599,2	K562	blood:
10	chr10:43843670..43847999-chr10:43855800..43861023,11	MCF-7	breast:
11	chr10:43791107..43791656-chr10:43844974..43845746,2	MCF-7	breast:
12	chr10:43837942..43841047-chr10:43842473..43845770,3	MCF-7	breast:
13	chr10:43844277..43847779-chr10:43901946..43904076,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10466239	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899791	0.86[ASN][1000 genomes]
rs10899793	0.86[ASN][1000 genomes]
rs10899796	0.81[ASN][1000 genomes]
rs11238515	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11238525	0.84[ASN][1000 genomes]
rs11238530	0.80[ASN][1000 genomes]
rs11814409	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12217904	0.92[ASN][1000 genomes]
rs17153534	0.86[ASN][1000 genomes]
rs4648316	0.86[ASN][1000 genomes]
rs59383062	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59806733	0.82[ASN][1000 genomes]
rs7921001	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv466882	chr10:43721481-43849358	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv550697	chr10:43721481-43849358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1044422	chr10:43731521-43860307	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43836600-43846000	Weak transcription	Right Atrium	heart
2	chr10:43838600-43845800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:43843400-43845600	Enhancers	Brain Hippocampus Middle	brain
4	chr10:43843600-43845400	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:43844000-43848600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:43844400-43845400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:43844400-43845400	Weak transcription	Stomach Mucosa	stomach
8	chr10:43844400-43845600	Weak transcription	NHEK	skin
9	chr10:43844400-43848400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:43844400-43848400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:43844400-43848400	Weak transcription	Hela-S3	cervix
12	chr10:43844400-43848600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:43844400-43848600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:43844400-43857200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:43844600-43845600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:43844600-43845800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:43844600-43846400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:43844600-43848600	Weak transcription	A549	lung
19	chr10:43844600-43849400	Weak transcription	K562	blood
20	chr10:43844800-43845800	Weak transcription	Brain Substantia Nigra	brain
21	chr10:43844800-43846000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:43845000-43845400	Weak transcription	Brain Angular Gyrus	brain
23	chr10:43845000-43846600	Enhancers	Fetal Heart	heart
24	chr10:43845200-43846000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:43845200-43846200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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