Variant report

Variant	rs11239575
Chromosome Location	chr10:46108553-46108554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11239573	1.00[CHB][hapmap]
rs11239580	1.00[CHB][hapmap]
rs11492889	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12355931	1.00[CHB][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12776675	1.00[LWK][hapmap]
rs17768692	1.00[LWK][hapmap]
rs7897036	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1050880	chr10:46091441-46160597	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv540588	chr10:46091441-46160597	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46090600-46167600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:46096200-46142000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:46096400-46121600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:46096400-46121800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:46097800-46121600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:46097800-46121800	Weak transcription	Psoas Muscle	Psoas
7	chr10:46098200-46153400	Weak transcription	HSMM	muscle
8	chr10:46099200-46122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:46099400-46119400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:46100200-46142600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:46101400-46112600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:46101600-46121800	Weak transcription	Brain Substantia Nigra	brain
13	chr10:46102600-46119400	Weak transcription	GM12878-XiMat	blood
14	chr10:46102800-46113200	Weak transcription	Placenta	Placenta
15	chr10:46103000-46121800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:46103000-46121800	Weak transcription	Spleen	Spleen
17	chr10:46103400-46130600	Weak transcription	Fetal Brain Male	brain
18	chr10:46103400-46142200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:46103600-46113400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:46103600-46121800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr10:46103600-46132600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:46103800-46110000	Weak transcription	Stomach Mucosa	stomach
23	chr10:46103800-46121400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:46103800-46134600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:46104400-46151400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:46104800-46109200	Strong transcription	Fetal Thymus	thymus
27	chr10:46104800-46121400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:46105000-46109200	Strong transcription	Primary T cells from cord blood	blood
29	chr10:46105000-46109200	Strong transcription	Liver	Liver
30	chr10:46105000-46109200	Strong transcription	Fetal Intestine Large	intestine
31	chr10:46105000-46109200	Strong transcription	Fetal Muscle Leg	muscle
32	chr10:46105000-46109200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:46105000-46121800	Weak transcription	Pancreas	Pancrea
34	chr10:46105200-46108600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:46105200-46108600	Strong transcription	Adipose Nuclei	Adipose
36	chr10:46105200-46108600	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:46105200-46109200	Strong transcription	Stomach Smooth Muscle	stomach
38	chr10:46105600-46141600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:46105800-46123800	Weak transcription	NHEK	skin
40	chr10:46106400-46121600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:46106400-46137000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:46106400-46141400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr10:46106400-46142000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:46106800-46108600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr10:46106800-46108600	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:46106800-46108800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:46106800-46128000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:46106800-46142000	Weak transcription	Fetal Kidney	kidney
49	chr10:46106800-46146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:46107000-46108600	Strong transcription	Brain Hippocampus Middle	brain

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