Variant report

Variant	rs11241054
Chromosome Location	chr5:98774009-98774010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1403660	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17167012	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1939403	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs1976860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2030604	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2257793	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3920377	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55873846	0.83[EUR][1000 genomes]
rs56957352	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv471631	chr5:98597573-98786486	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758005	chr5:98605325-98889594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759358	chr5:98605325-98889594	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022266	chr5:98662648-99068661	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv427725	chr5:98739083-99048829	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1033966	chr5:98753399-98878804	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1023117	chr5:98753399-98935234	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1033873	chr5:98758435-98814748	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1015193	chr5:98758435-98819617	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv2763472	chr5:98767744-98813855	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv1023389	chr5:98769659-98799864	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv1022942	chr5:98769659-98809034	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv1033015	chr5:98769659-98813843	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv1015858	chr5:98769659-98814748	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv1033525	chr5:98769659-98819617	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	nsv1032125	chr5:98769659-98821072	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv1024998	chr5:98769659-98840614	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1021478	chr5:98769659-98844524	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1033351	chr5:98769659-98902554	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv882420	chr5:98770145-99183797	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv599125	chr5:98770698-98841255	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv964910	chr5:98771078-98803307	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv1022318	chr5:98772752-98839862	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98773400-98774200	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links