Variant report

Variant	rs55873846
Chromosome Location	chr5:98830195-98830196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11241054	0.83[EUR][1000 genomes]
rs1403660	0.84[EUR][1000 genomes]
rs17167012	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1976860	0.85[EUR][1000 genomes]
rs2030604	0.83[EUR][1000 genomes]
rs3920377	0.84[EUR][1000 genomes]
rs56957352	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758005	chr5:98605325-98889594	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759358	chr5:98605325-98889594	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022266	chr5:98662648-99068661	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv427725	chr5:98739083-99048829	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1033966	chr5:98753399-98878804	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1023117	chr5:98753399-98935234	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1024998	chr5:98769659-98840614	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1021478	chr5:98769659-98844524	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1033351	chr5:98769659-98902554	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv882420	chr5:98770145-99183797	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv599125	chr5:98770698-98841255	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1022318	chr5:98772752-98839862	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv2755022	chr5:98774240-98842090	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv882421	chr5:98779530-99249466	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv980577	chr5:98803307-98830503	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv2491334	chr5:98809278-98843644	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv599127	chr5:98826218-98841199	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv599128	chr5:98826556-98841255	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98829400-98830400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:98830000-98830400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:98830000-98830400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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