Variant report

Variant	rs11241321
Chromosome Location	chr5:114700212-114700213
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114684315..114686804-chr5:114699761..114703151,3	MCF-7	breast:
2	chr5:114700131..114702425-chr5:114706517..114709440,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11241324	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11748373	0.89[AMR][1000 genomes]
rs12520500	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13153377	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13163877	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13164050	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13186911	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2166339	0.84[ASN][1000 genomes]
rs3752049	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3797573	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6883155	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
2	chr5:114696400-114701400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:114696400-114701400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:114696400-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:114696400-114701400	Weak transcription	NH-A	brain
6	chr5:114696400-114701400	Weak transcription	NHLF	lung
7	chr5:114696400-114701600	Weak transcription	Osteobl	bone
8	chr5:114696400-114701800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:114696600-114701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:114696600-114701400	Weak transcription	HSMMtube	muscle
11	chr5:114696600-114701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:114696600-114701600	Weak transcription	A549	lung
13	chr5:114696600-114701800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:114696800-114702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:114696800-114704200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:114699200-114700400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:114699600-114702600	Enhancers	Fetal Muscle Leg	muscle
18	chr5:114699800-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:114699800-114701400	Weak transcription	Right Ventricle	heart
20	chr5:114699800-114706600	Weak transcription	Gastric	stomach
21	chr5:114700000-114700600	Enhancers	NHDF-Ad	bronchial
22	chr5:114700000-114701400	Weak transcription	Psoas Muscle	Psoas
23	chr5:114700000-114703000	Enhancers	HUVEC	blood vessel
24	chr5:114700000-114704200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr5:114700200-114701400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:114700200-114715800	Weak transcription	Pancreas	Pancrea

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