Variant report

Variant	rs3797573
Chromosome Location	chr5:114725764-114725765
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114725594..114727819-chr5:114879941..114881957,2	MCF-7	breast:
2	chr5:114713804..114715548-chr5:114724717..114726881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145780	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11241321	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11241324	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11748373	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12520500	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13153377	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13163877	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13164050	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13186911	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2166339	1.00[ASN][1000 genomes]
rs3752049	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4626329	0.88[EUR][1000 genomes]
rs6883155	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882733	chr5:114702503-114726351	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114723400-114726000	Enhancers	NHLF	lung
2	chr5:114723800-114726800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:114724000-114726000	Enhancers	NHDF-Ad	bronchial
4	chr5:114724200-114726000	Enhancers	Fetal Lung	lung
5	chr5:114724400-114725800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:114724800-114725800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:114724800-114725800	Enhancers	Fetal Stomach	stomach
8	chr5:114724800-114725800	Enhancers	Stomach Smooth Muscle	stomach
9	chr5:114725000-114725800	Enhancers	Fetal Heart	heart
10	chr5:114725200-114725800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:114725200-114725800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:114725200-114725800	Enhancers	Left Ventricle	heart
13	chr5:114725200-114725800	Enhancers	Pancreas	Pancrea
14	chr5:114725200-114725800	Enhancers	Right Atrium	heart
15	chr5:114725200-114725800	Enhancers	Right Ventricle	heart
16	chr5:114725200-114725800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr5:114725200-114726000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr5:114725200-114726200	Enhancers	Fetal Muscle Leg	muscle
19	chr5:114725400-114726000	Enhancers	Placenta	Placenta
20	chr5:114725400-114726200	Enhancers	Gastric	stomach
21	chr5:114725400-114728200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:114725400-114728200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:114725400-114728400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:114725600-114725800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:114725600-114725800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:114725600-114725800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:114725600-114725800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr5:114725600-114725800	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links