Variant report

Variant	rs1124827
Chromosome Location	chr22:30869336-30869337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11703735	1.00[YRI][hapmap]
rs11705494	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30866800-30869400	Enhancers	Liver	Liver
2	chr22:30867600-30869400	Enhancers	Lung	lung
3	chr22:30868000-30869600	Enhancers	Esophagus	oesophagus
4	chr22:30868200-30869600	Enhancers	Hela-S3	cervix
5	chr22:30868200-30872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr22:30868600-30869400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr22:30868600-30869600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr22:30868600-30870800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr22:30868800-30869400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr22:30868800-30869400	Enhancers	HSMMtube	muscle
11	chr22:30868800-30869600	Enhancers	HMEC	breast
12	chr22:30868800-30869600	Bivalent Enhancer	NHEK	skin
13	chr22:30869000-30869600	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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