Variant report

Variant	rs11703735
Chromosome Location	chr22:30879282-30879283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1124827	1.00[YRI][hapmap]
rs11705494	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs41282475	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41282477	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4820015	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5997660	0.81[EUR][1000 genomes]
rs5997665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs933339	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30872800-30881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:30874600-30894000	Weak transcription	Right Atrium	heart
3	chr22:30878000-30881800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr22:30878200-30881200	Weak transcription	Osteobl	bone
5	chr22:30878400-30879400	Weak transcription	Brain Anterior Caudate	brain
6	chr22:30879000-30879600	Enhancers	HUVEC	blood vessel
7	chr22:30879200-30880000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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