Variant report

Variant	rs11249604
Chromosome Location	chr5:178352245-178352246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10052356	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434802	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12719860	0.85[CHB][hapmap]
rs17078801	0.81[JPT][hapmap]
rs17663795	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3925227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60943644	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62395089	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816639	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712073	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7723421	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs961030	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600466	chr5:178344648-178352245	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv600467	chr5:178344648-178352820	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600468	chr5:178344648-178353156	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv821324	chr5:178345876-178353585	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3470265	chr5:178348231-178353308	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3470264	chr5:178348285-178353276	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3470262	chr5:178348302-178353229	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3470266	chr5:178348363-178353198	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv12223	chr5:178348371-178353189	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv1833783	chr5:178348445-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1835389	chr5:178348445-178353321	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1837400	chr5:178348445-178353321	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv1839542	chr5:178348445-178353321	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv600471	chr5:178348554-178352245	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv600472	chr5:178348554-178352386	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv600473	chr5:178348554-178352820	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1835813	chr5:178348554-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv600474	chr5:178348554-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1841499	chr5:178348554-178353321	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv600476	chr5:178348605-178352245	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv600477	chr5:178348605-178352820	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv1839898	chr5:178348605-178353156	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv1841549	chr5:178348605-178353156	Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv600478	chr5:178348933-178352245	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv600479	chr5:178348933-178353156	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv600481	chr5:178349057-178352245	ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv964988	chr5:178349100-178353458	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
29	nsv600482	chr5:178349391-178352245	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
30	nsv600483	chr5:178349391-178352820	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
31	nsv600484	chr5:178349438-178352245	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
32	nsv600485	chr5:178350387-178352820	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
33	nsv600486	chr5:178350387-178353156	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
34	nsv600487	chr5:178350596-178352820	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
35	nsv600488	chr5:178350596-178353156	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178347800-178352400	ZNF genes & repeats	Fetal Lung	lung
5	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr5:178348000-178359800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:178348000-178360200	ZNF genes & repeats	Left Ventricle	heart
9	chr5:178348600-178352400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:178348800-178357800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
12	chr5:178351600-178352600	ZNF genes & repeats	Pancreas	Pancrea
13	chr5:178351600-178359600	ZNF genes & repeats	Aorta	Aorta
14	chr5:178352200-178352600	ZNF genes & repeats	Brain Angular Gyrus	brain
15	chr5:178352200-178352600	ZNF genes & repeats	Fetal Heart	heart
16	chr5:178352200-178359200	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr5:178352200-178363200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
18	chr5:178352200-178366800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
19	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain

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