Variant report

Variant	rs7723421
Chromosome Location	chr5:178340304-178340305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10043597	0.95[ASN][1000 genomes]
rs10052356	0.81[ASN][1000 genomes]
rs10434802	0.81[ASN][1000 genomes]
rs11249604	0.81[ASN][1000 genomes]
rs17663795	0.81[ASN][1000 genomes]
rs3925227	0.85[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs60943644	0.81[ASN][1000 genomes]
rs62395089	0.81[ASN][1000 genomes]
rs6896077	0.88[EUR][1000 genomes]
rs72816639	0.81[ASN][1000 genomes]
rs7712073	0.81[ASN][1000 genomes]
rs7724141	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7723421	ZNF354B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178340600	ZNF genes & repeats	Brain Substantia Nigra	brain
2	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
3	chr5:178335800-178342200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr5:178336000-178340400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178337000-178340600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:178339000-178340400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
8	chr5:178339000-178340600	ZNF genes & repeats	Fetal Brain Female	brain
9	chr5:178339000-178340600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr5:178339200-178340400	ZNF genes & repeats	Aorta	Aorta
11	chr5:178339200-178340400	ZNF genes & repeats	Left Ventricle	heart
12	chr5:178339200-178340400	ZNF genes & repeats	Ovary	ovary
13	chr5:178339200-178340600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr5:178339400-178340400	ZNF genes & repeats	Fetal Brain Male	brain
15	chr5:178339400-178340600	ZNF genes & repeats	Brain Hippocampus Middle	brain
16	chr5:178339400-178340600	ZNF genes & repeats	Fetal Lung	lung
17	chr5:178339400-178340600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
18	chr5:178339400-178340800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr5:178339600-178340400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:178339600-178340600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:178339600-178340800	ZNF genes & repeats	Brain Anterior Caudate	brain
22	chr5:178339800-178340400	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr5:178339800-178340400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
24	chr5:178340000-178340400	ZNF genes & repeats	Placenta	Placenta
25	chr5:178340000-178340400	ZNF genes & repeats	Right Ventricle	heart
26	chr5:178340000-178340800	Strong transcription	Fetal Kidney	kidney
27	chr5:178340000-178341800	Weak transcription	Pancreas	Pancrea
28	chr5:178340200-178340600	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:178340200-178341600	Weak transcription	Psoas Muscle	Psoas
30	chr5:178340200-178342600	Weak transcription	Fetal Stomach	stomach

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