Variant report

Variant	rs7724141
Chromosome Location	chr5:178340055-178340056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10464071	0.97[ASN][1000 genomes]
rs10464073	0.85[JPT][hapmap]
rs11948175	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs11948664	0.81[EUR][1000 genomes]
rs11948690	0.93[CEU][hapmap]
rs11949180	0.93[CEU][hapmap]
rs11949892	0.91[CEU][hapmap]
rs11950746	0.81[EUR][1000 genomes]
rs11954382	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs11958887	0.93[CEU][hapmap]
rs11958941	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs11960942	0.81[EUR][1000 genomes]
rs12055116	0.97[ASN][1000 genomes]
rs12553	0.83[EUR][1000 genomes]
rs1566106	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs17078801	0.89[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2856354	0.85[JPT][hapmap]
rs35609799	0.81[EUR][1000 genomes]
rs35957383	0.81[EUR][1000 genomes]
rs56814168	0.81[EUR][1000 genomes]
rs57153194	0.84[EUR][1000 genomes]
rs57426447	0.82[EUR][1000 genomes]
rs58554591	0.81[EUR][1000 genomes]
rs58941917	0.81[EUR][1000 genomes]
rs59713908	0.98[ASN][1000 genomes]
rs59829327	0.85[EUR][1000 genomes]
rs61295075	0.81[EUR][1000 genomes]
rs61492890	0.85[EUR][1000 genomes]
rs62395084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6600991	0.85[EUR][1000 genomes]
rs6859174	0.83[EUR][1000 genomes]
rs6861717	0.82[EUR][1000 genomes]
rs6862829	0.93[CEU][hapmap]
rs6863160	0.85[EUR][1000 genomes]
rs6863202	0.82[EUR][1000 genomes]
rs6863603	0.83[EUR][1000 genomes]
rs6865216	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs6866591	0.85[EUR][1000 genomes]
rs6869134	0.83[ASN][1000 genomes]
rs6870926	0.93[CEU][hapmap]
rs6877663	0.81[EUR][1000 genomes]
rs6878353	0.83[EUR][1000 genomes]
rs6882396	0.81[EUR][1000 genomes]
rs6883566	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs6887256	0.81[EUR][1000 genomes]
rs6890083	0.84[EUR][1000 genomes]
rs6894878	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs6895371	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs7706558	0.83[EUR][1000 genomes]
rs7723421	0.81[JPT][hapmap]
rs7731067	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178340600	ZNF genes & repeats	Brain Substantia Nigra	brain
2	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
3	chr5:178335800-178342200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr5:178336000-178340400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178337000-178340600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:178339000-178340400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
8	chr5:178339000-178340600	ZNF genes & repeats	Fetal Brain Female	brain
9	chr5:178339000-178340600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr5:178339200-178340400	ZNF genes & repeats	Aorta	Aorta
11	chr5:178339200-178340400	ZNF genes & repeats	Left Ventricle	heart
12	chr5:178339200-178340400	ZNF genes & repeats	Ovary	ovary
13	chr5:178339200-178340600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr5:178339400-178340400	ZNF genes & repeats	Fetal Brain Male	brain
15	chr5:178339400-178340600	ZNF genes & repeats	Brain Hippocampus Middle	brain
16	chr5:178339400-178340600	ZNF genes & repeats	Fetal Lung	lung
17	chr5:178339400-178340600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
18	chr5:178339400-178340800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr5:178339600-178340200	ZNF genes & repeats	Lung	lung
20	chr5:178339600-178340400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:178339600-178340600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:178339600-178340800	ZNF genes & repeats	Brain Anterior Caudate	brain
23	chr5:178339800-178340400	ZNF genes & repeats	Brain Germinal Matrix	brain
24	chr5:178339800-178340400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
25	chr5:178340000-178340200	ZNF genes & repeats	Fetal Stomach	stomach
26	chr5:178340000-178340200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
27	chr5:178340000-178340400	ZNF genes & repeats	Placenta	Placenta
28	chr5:178340000-178340400	ZNF genes & repeats	Right Ventricle	heart
29	chr5:178340000-178340800	Strong transcription	Fetal Kidney	kidney
30	chr5:178340000-178341800	Weak transcription	Pancreas	Pancrea

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