Variant report

Variant	rs10464071
Chromosome Location	chr5:178334403-178334404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10464073	0.84[JPT][hapmap]
rs12055116	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12654347	1.00[CEU][hapmap]
rs17078801	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2856354	0.84[JPT][hapmap]
rs59713908	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62395084	0.97[ASN][1000 genomes]
rs62395085	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6869134	0.81[ASN][1000 genomes]
rs7444300	1.00[CEU][hapmap]
rs7723421	0.81[JPT][hapmap]
rs7724141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
3	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:178332400-178334600	ZNF genes & repeats	Liver	Liver
5	chr5:178333000-178335800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:178333400-178335600	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:178333400-178335600	Weak transcription	Brain Substantia Nigra	brain
8	chr5:178333400-178335600	Weak transcription	Left Ventricle	heart
9	chr5:178333400-178335800	Weak transcription	Gastric	stomach
10	chr5:178333400-178336000	Weak transcription	Brain Angular Gyrus	brain
11	chr5:178333400-178336200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:178333400-178336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:178333400-178336200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:178334200-178334800	Strong transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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