Variant report

Variant	rs6869134
Chromosome Location	chr5:178362152-178362153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178361102..178363466-chr5:178379891..178382466,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10464071	0.81[ASN][1000 genomes]
rs12055116	0.81[ASN][1000 genomes]
rs17078795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17078801	0.98[ASN][1000 genomes]
rs59713908	0.82[ASN][1000 genomes]
rs62395084	0.83[ASN][1000 genomes]
rs7724141	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
7	chr5:178352200-178363200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
8	chr5:178352200-178366800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
9	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:178353400-178367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr5:178353600-178365800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
13	chr5:178353800-178362200	ZNF genes & repeats	Placenta	Placenta
14	chr5:178353800-178363000	ZNF genes & repeats	Fetal Lung	lung
15	chr5:178353800-178364000	ZNF genes & repeats	Brain Angular Gyrus	brain
16	chr5:178353800-178366800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
17	chr5:178353800-178367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
19	chr5:178360600-178366600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:178360800-178365600	ZNF genes & repeats	Aorta	Aorta
21	chr5:178360800-178365800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
22	chr5:178361600-178365800	ZNF genes & repeats	Left Ventricle	heart
23	chr5:178361800-178364400	ZNF genes & repeats	Right Ventricle	heart

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