Variant report

Variant	rs17078795
Chromosome Location	chr5:178367200-178367201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM6-1	chr5:178366753-178368084	ENSG00000248595
2	lnc-GRM6-1	chr5:178364381-178367686	NONHSAT105563

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10464073	0.86[CHD][hapmap]
rs17078801	0.89[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs2856354	0.86[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs6869134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
4	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain
5	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:178353400-178367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr5:178353800-178367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
9	chr5:178362800-178369000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr5:178363200-178369000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr5:178363400-178367400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:178363800-178367200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr5:178363800-178369000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:178364000-178368800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr5:178364600-178369200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr5:178365000-178367200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:178365000-178367200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:178365000-178367400	ZNF genes & repeats	Fetal Lung	lung
19	chr5:178365000-178367600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:178365200-178367400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
21	chr5:178365200-178367400	ZNF genes & repeats	Fetal Stomach	stomach
22	chr5:178365200-178369200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:178365800-178367600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:178366000-178367200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
25	chr5:178366000-178367200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:178366000-178368000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
27	chr5:178366000-178370200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr5:178366200-178368000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:178366200-178368200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
30	chr5:178366400-178367200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
31	chr5:178366400-178369000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr5:178366400-178369200	ZNF genes & repeats	Lung	lung
33	chr5:178366400-178372600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:178366600-178367200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr5:178366600-178367600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
36	chr5:178366600-178369000	Active TSS	Stomach Mucosa	stomach
37	chr5:178366800-178367200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:178366800-178367200	ZNF genes & repeats	Colon Smooth Muscle	Colon
39	chr5:178366800-178367200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:178366800-178367200	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr5:178366800-178367800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
42	chr5:178366800-178368000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
43	chr5:178366800-178368800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:178366800-178368800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
45	chr5:178366800-178368800	Active TSS	Brain Angular Gyrus	brain
46	chr5:178366800-178369000	Active TSS	Brain Cingulate Gyrus	brain
47	chr5:178366800-178369000	ZNF genes & repeats	HSMMtube	muscle
48	chr5:178366800-178370200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
49	chr5:178366800-178370200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
50	chr5:178366800-178370400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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