Variant report

Variant	rs59713908
Chromosome Location	chr5:178335693-178335694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10464071	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12055116	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17078801	0.87[AMR][1000 genomes]
rs62395084	0.98[ASN][1000 genomes]
rs6869134	0.82[ASN][1000 genomes]
rs7724141	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3470830	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3470831	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
2	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:178333000-178335800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:178333400-178335800	Weak transcription	Gastric	stomach
5	chr5:178333400-178336000	Weak transcription	Brain Angular Gyrus	brain
6	chr5:178333400-178336200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:178333400-178336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:178333400-178336200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:178334800-178336000	Weak transcription	Ovary	ovary
10	chr5:178335600-178340600	ZNF genes & repeats	Brain Substantia Nigra	brain
11	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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