Variant report

Variant	rs6863160
Chromosome Location	chr5:178330837-178330838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10039708	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11948175	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11948664	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11948690	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11949180	0.94[EUR][1000 genomes]
rs11949181	0.94[EUR][1000 genomes]
rs11949892	0.94[EUR][1000 genomes]
rs11949941	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11950641	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11950746	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11952790	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11954382	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11955047	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11958804	0.82[AMR][1000 genomes]
rs11958887	0.94[EUR][1000 genomes]
rs11958941	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11960942	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12186577	0.81[EUR][1000 genomes]
rs12186584	0.82[EUR][1000 genomes]
rs12187167	0.82[EUR][1000 genomes]
rs12553	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1566106	0.96[EUR][1000 genomes]
rs35609799	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35957383	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56814168	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56872885	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56932649	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56951084	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57153194	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57426447	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58354049	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58554591	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58672680	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58679434	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58941917	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59242428	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59736551	0.89[EUR][1000 genomes]
rs59829327	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59849584	0.82[EUR][1000 genomes]
rs59994898	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60178472	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60277514	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60417551	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60601817	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60813042	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61295075	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61310482	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61492890	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744382	0.82[EUR][1000 genomes]
rs62395084	0.84[EUR][1000 genomes]
rs6600991	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6859174	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6861717	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6863202	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6863603	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6865216	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6866591	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870926	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6877663	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6878353	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6882396	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6883566	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6887256	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6890083	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6894878	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6895371	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7706558	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7724141	0.85[EUR][1000 genomes]
rs7727497	0.83[EUR][1000 genomes]
rs7729560	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7729717	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7731067	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178331200	Weak transcription	Pancreas	Pancrea
2	chr5:178323600-178332800	Weak transcription	Left Ventricle	heart
3	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:178323800-178331000	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:178323800-178332800	Weak transcription	Placenta	Placenta
6	chr5:178323800-178332800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:178323800-178333800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
9	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:178324000-178332800	Weak transcription	Brain Angular Gyrus	brain
11	chr5:178324000-178332800	Weak transcription	Brain Anterior Caudate	brain
12	chr5:178325800-178332800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:178328000-178334400	Weak transcription	Psoas Muscle	Psoas
14	chr5:178328600-178331200	Weak transcription	Aorta	Aorta
15	chr5:178328600-178332800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:178328600-178332800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:178328600-178332800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:178328600-178332800	Weak transcription	Brain Substantia Nigra	brain
19	chr5:178328600-178332800	Weak transcription	Gastric	stomach
20	chr5:178328800-178332800	Weak transcription	Ovary	ovary
21	chr5:178329600-178332800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:178330200-178331000	Weak transcription	Liver	Liver
23	chr5:178330200-178332800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:178330400-178331200	Weak transcription	Fetal Lung	lung

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