Variant report

Variant	rs11249605
Chromosome Location	chr5:178356808-178356809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178355351..178357900-chr5:178539539..178541563,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11750407	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2016198	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34797550	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700746	0.81[CHB][hapmap]
rs4700972	0.80[CHB][hapmap]
rs7701540	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5156	chr5:178346825-178367067	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr5:178347800-178366800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr5:178347800-178367400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr5:178348000-178359800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:178348000-178360200	ZNF genes & repeats	Left Ventricle	heart
8	chr5:178348800-178357800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:178351400-178367400	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr5:178351600-178359600	ZNF genes & repeats	Aorta	Aorta
11	chr5:178352200-178359200	ZNF genes & repeats	Brain Germinal Matrix	brain
12	chr5:178352200-178363200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
13	chr5:178352200-178366800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr5:178352200-178367200	ZNF genes & repeats	Brain Substantia Nigra	brain
15	chr5:178352400-178360200	ZNF genes & repeats	Ovary	ovary
16	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:178352600-178357000	Weak transcription	Fetal Heart	heart
18	chr5:178353400-178360400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
19	chr5:178353400-178367400	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr5:178353600-178361800	ZNF genes & repeats	Colon Smooth Muscle	Colon
21	chr5:178353600-178365800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
22	chr5:178353800-178357800	ZNF genes & repeats	Lung	lung
23	chr5:178353800-178358400	ZNF genes & repeats	Pancreas	Pancrea
24	chr5:178353800-178362200	ZNF genes & repeats	Placenta	Placenta
25	chr5:178353800-178363000	ZNF genes & repeats	Fetal Lung	lung
26	chr5:178353800-178364000	ZNF genes & repeats	Brain Angular Gyrus	brain
27	chr5:178353800-178366800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
28	chr5:178353800-178367200	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
30	chr5:178354000-178357800	ZNF genes & repeats	Fetal Stomach	stomach
31	chr5:178354000-178359800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
32	chr5:178354800-178360200	ZNF genes & repeats	Right Ventricle	heart
33	chr5:178355000-178359800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:178355000-178359800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr5:178355000-178360400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr5:178355000-178360400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
37	chr5:178355200-178358600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
38	chr5:178355400-178357200	ZNF genes & repeats	Dnd41	blood
39	chr5:178355600-178358000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:178355600-178361400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
41	chr5:178356200-178359600	ZNF genes & repeats	Fetal Kidney	kidney
42	chr5:178356400-178358800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
43	chr5:178356400-178360400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
44	chr5:178356600-178358800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr5:178356800-178358800	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr5:178356800-178360400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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