Variant report

Variant	rs11250289
Chromosome Location	chr10:173711-173712
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:132310..134849-chr10:173480..175409,2	MCF-7	breast:
2	chr10:156667..158237-chr10:173423..176164,2	K562	blood:
3	chr10:172361..174239-chr10:180491..183346,2	K562	blood:

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10794721	0.87[EUR][1000 genomes]
rs10903692	0.83[AMR][1000 genomes]
rs11250292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250419	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250488	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11250528	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11250529	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11250575	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11250790	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11250797	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11251173	0.81[AMR][1000 genomes]
rs11592007	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11592027	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11594308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360337	0.83[AMR][1000 genomes]
rs17221197	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17221225	0.83[AMR][1000 genomes]
rs17221239	0.81[AMR][1000 genomes]
rs2379049	0.81[EUR][1000 genomes]
rs4369322	0.85[EUR][1000 genomes]
rs56217646	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56335464	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61836334	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61836335	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61836338	0.82[AMR][1000 genomes]
rs7089302	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7090608	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7909028	0.87[EUR][1000 genomes]
rs7912326	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9419493	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:173000-174400	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:173400-173800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:173400-174000	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr10:173400-174000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr10:173400-174000	Active TSS	GM12878-XiMat	blood
6	chr10:173400-174200	Flanking Active TSS	Dnd41	blood
7	chr10:173400-174600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr10:173400-175200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:173600-174000	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr10:173600-174000	Active TSS	Primary T cells from cord blood	blood
11	chr10:173600-174000	Active TSS	Primary T cells fromperipheralblood	blood
12	chr10:173600-174000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr10:173600-174000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:173600-174000	Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr10:173600-174000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr10:173600-174000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:173600-174000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:173600-174000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr10:173600-174000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:173600-174000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:173600-174000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr10:173600-174000	Active TSS	Duodenum Mucosa	Duodenum
23	chr10:173600-174000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr10:173600-174200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr10:173600-174200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:173600-174200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:173600-174200	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr10:173600-174200	Flanking Active TSS	HUVEC	blood vessel
29	chr10:173600-174600	Enhancers	Primary neutrophils fromperipheralblood	blood

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