Variant report

Variant	rs10794721
Chromosome Location	chr10:170612-170613
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:168591..171249-chr10:178702..182532,3	MCF-7	breast:
2	chr10:167772..170758-chr10:173854..175773,2	MCF-7	breast:
3	chr10:153557..155459-chr10:169856..171812,2	MCF-7	breast:
4	chr10:156274..158254-chr10:169856..171725,2	MCF-7	breast:
5	chr10:137498..140184-chr10:169543..172889,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11250289	0.87[EUR][1000 genomes]
rs11250292	0.88[EUR][1000 genomes]
rs11250419	0.86[EUR][1000 genomes]
rs11250488	0.83[EUR][1000 genomes]
rs11250528	0.81[EUR][1000 genomes]
rs11250529	0.84[EUR][1000 genomes]
rs11594308	0.88[EUR][1000 genomes]
rs1476130	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2379049	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436030	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2448364	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2448366	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2448371	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2448373	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2448380	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2448381	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2448384	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2496275	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2496278	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3131995	0.81[AMR][1000 genomes]
rs34926441	0.80[AMR][1000 genomes]
rs4275539	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4331015	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4369322	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4880809	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7089889	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7476951	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7909028	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7909116	0.80[AMR][1000 genomes]
rs7919162	0.82[AMR][1000 genomes]
rs7919436	0.82[AMR][1000 genomes]
rs9419432	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9419493	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9419496	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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