Variant report

Variant	rs7476951
Chromosome Location	chr10:183151-183152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:176379..179219-chr10:182870..185240,2	K562	blood:
2	chr10:181564..184066-chr10:246136..248414,3	MCF-7	breast:
3	chr10:130789..140912-chr10:178561..185139,27	MCF-7	breast:
4	chr10:122206..123911-chr10:181782..183657,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232420	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10736951	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10794721	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11250790	0.86[JPT][hapmap]
rs11250797	0.84[JPT][hapmap]
rs1476130	0.92[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap]
rs2379049	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2448364	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2448366	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[ASN][1000 genomes]
rs2448373	0.83[ASN][1000 genomes]
rs2448380	0.81[JPT][hapmap]
rs2448384	0.90[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs2496275	0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs2496278	0.92[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap]
rs4275539	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4331015	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4369322	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4880809	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56335464	0.88[EUR][1000 genomes]
rs7089889	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909028	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7919162	0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap]
rs7919436	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs9419432	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9419493	0.93[ASN][1000 genomes]
rs9419496	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:180400-183200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:180600-183200	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:180800-183600	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:182000-183200	ZNF genes & repeats	Fetal Brain Male	brain
5	chr10:182000-183200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr10:182200-183200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr10:182200-183200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:182200-183200	Flanking Active TSS	Liver	Liver
9	chr10:182200-183200	Flanking Active TSS	Fetal Lung	lung
10	chr10:182200-183200	Transcr. at gene 5' and 3'	Dnd41	blood
11	chr10:182200-183200	Flanking Active TSS	HUVEC	blood vessel
12	chr10:182200-183400	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr10:182200-183400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr10:182200-183600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr10:182400-183200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr10:182400-183200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:182400-183200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr10:182400-183200	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr10:182400-183200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:182400-183200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr10:182400-183200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:182400-183200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr10:182400-183200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:182400-183200	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr10:182400-183200	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr10:182400-183200	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr10:182400-183200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr10:182400-183200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:182400-183200	Flanking Active TSS	Brain Substantia Nigra	brain
30	chr10:182400-183200	Flanking Active TSS	Fetal Brain Female	brain
31	chr10:182400-183200	Flanking Active TSS	Fetal Kidney	kidney
32	chr10:182400-183200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr10:182400-183200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr10:182400-183200	Flanking Active TSS	Right Ventricle	heart
35	chr10:182400-183200	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr10:182400-183200	Flanking Active TSS	Hela-S3	cervix
37	chr10:182400-183200	Flanking Active TSS	HMEC	breast
38	chr10:182400-183200	Flanking Active TSS	HSMM	muscle
39	chr10:182400-183200	Flanking Active TSS	Osteobl	bone
40	chr10:182400-183400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr10:182400-183400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:182400-183400	Flanking Active TSS	Brain Hippocampus Middle	brain
43	chr10:182400-183400	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr10:182400-183400	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr10:182400-183400	Flanking Active TSS	NHEK	skin
46	chr10:182400-183400	Flanking Active TSS	NHLF	lung
47	chr10:182400-183600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:182400-183600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:182400-183600	Flanking Active TSS	NH-A	brain
50	chr10:182600-183200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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