Variant report

Variant	rs11252440
Chromosome Location	chr10:4327449-4327450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4326364..4328633-chr10:4329094..4331140,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11252431	1.00[MEX][hapmap]
rs11252439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11252443	0.93[AFR][1000 genomes]
rs35966232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs748613	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
2	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:4321600-4327800	Enhancers	NHLF	lung
6	chr10:4323400-4327800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:4323400-4331000	Weak transcription	Lung	lung
8	chr10:4324800-4327800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:4325000-4329800	Weak transcription	Left Ventricle	heart
10	chr10:4326000-4327600	Enhancers	Ovary	ovary
11	chr10:4326000-4327600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:4326200-4327600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:4326200-4327800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:4326200-4328200	Enhancers	Dnd41	blood
15	chr10:4326400-4329800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:4326600-4328800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:4326600-4330000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:4326800-4327600	Enhancers	Fetal Thymus	thymus
19	chr10:4327000-4327600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:4327000-4327600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:4327000-4327800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:4327000-4327800	Enhancers	NHDF-Ad	bronchial
23	chr10:4327000-4329400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:4327000-4331000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:4327000-4334600	Weak transcription	Right Atrium	heart
26	chr10:4327200-4327800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr10:4327200-4327800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:4327200-4329800	Weak transcription	Adipose Nuclei	Adipose

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