Variant report

Variant	rs748613
Chromosome Location	chr10:4471661-4471662
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11252431	1.00[MEX][hapmap]
rs11815885	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34781915	0.87[AMR][1000 genomes]
rs34987229	0.87[AMR][1000 genomes]
rs35664926	0.87[AMR][1000 genomes]
rs7916269	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1051290	chr10:4435293-4493026	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv540461	chr10:4435293-4493026	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4468400-4472400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:4469400-4473400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:4469600-4472000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4469600-4472400	Enhancers	Fetal Lung	lung
5	chr10:4469800-4472200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:4470000-4481400	Weak transcription	Aorta	Aorta
7	chr10:4470400-4473400	Weak transcription	NHDF-Ad	bronchial
8	chr10:4470400-4479200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:4470600-4472000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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