Variant report

Variant	rs34987229
Chromosome Location	chr10:4449885-4449886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34781915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35664926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35761744	0.83[EUR][1000 genomes]
rs748613	0.87[AMR][1000 genomes]
rs7916269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv437654	chr10:4428563-4459527	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1051290	chr10:4435293-4493026	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv540461	chr10:4435293-4493026	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4442200-4450000	Weak transcription	NHDF-Ad	bronchial
2	chr10:4448400-4451000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:4448800-4451000	Weak transcription	Fetal Heart	heart
4	chr10:4449000-4454200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:4449200-4451800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:4449600-4451600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:4449800-4450800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:4449800-4450800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:4449800-4450800	Enhancers	HMEC	breast
10	chr10:4449800-4451000	Enhancers	Dnd41	blood
11	chr10:4449800-4451000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:4449800-4451000	Enhancers	NHEK	skin
13	chr10:4449800-4451000	Enhancers	Osteobl	bone
14	chr10:4449800-4451200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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