Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:16406573..16409426-chr10:16416756..16418414,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10904721	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11253933	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11253941	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11253942	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11253946	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11253950	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11253951	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11253952	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11253953	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11253954	0.81[EUR][1000 genomes]
rs11253957	0.81[EUR][1000 genomes]
rs11253960	0.81[EUR][1000 genomes]
rs12218570	0.95[EUR][1000 genomes]
rs12242634	0.90[EUR][1000 genomes]
rs12570048	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17138484	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17138492	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17138511	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6602101	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7099690	0.81[EUR][1000 genomes]
rs72770421	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72770425	0.81[EUR][1000 genomes]
rs72770445	0.81[EUR][1000 genomes]
rs7909328	0.95[EUR][1000 genomes]
rs988459	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16403400-16428600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:16409200-16409800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr10:16409200-16410000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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