Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10904721	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11253933	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11253941	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11253942	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11253944	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11253946	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11253950	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11253951	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11253952	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11253953	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12218570	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12242634	0.87[EUR][1000 genomes]
rs17138484	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17138492	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17138511	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6602101	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7082220	0.81[ASN][1000 genomes]
rs7099690	0.81[ASN][1000 genomes]
rs72768690	0.83[EUR][1000 genomes]
rs72768692	0.83[EUR][1000 genomes]
rs72770421	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7909328	0.93[EUR][1000 genomes]
rs988459	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16371800-16402200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:16391200-16403000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:16392000-16401800	Weak transcription	H1 Cell Line	embryonic stem cell

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