Variant report

Variant	rs11256667
Chromosome Location	chr10:6132443-6132444
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6130789..6132928-chr10:6134999..6139816,5	MCF-7	breast:
2	chr10:6018551..6021640-chr10:6130714..6134315,5	MCF-7	breast:
3	chr10:6130983..6133585-chr10:6620139..6622430,2	K562	blood:
4	chr10:6129825..6133257-chr10:6241985..6247329,10	MCF-7	breast:
5	chr10:6130591..6133050-chr10:6185385..6187497,2	MCF-7	breast:
6	chr10:6131418..6133941-chr10:6140772..6145305,6	K562	blood:
7	chr10:6074070..6077031-chr10:6131328..6132999,2	K562	blood:
8	chr10:6131173..6133943-chr10:6186718..6189110,2	MCF-7	breast:
9	chr10:6130589..6132639-chr10:6184439..6189476,5	K562	blood:
10	chr10:6130957..6132763-chr10:6153390..6155892,2	MCF-7	breast:
11	chr10:6128513..6130219-chr10:6132306..6134990,2	MCF-7	breast:
12	chr10:6131719..6134216-chr10:6253022..6254903,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000237943	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000065675	Chromatin interaction
ENSG00000134453	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10905773	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10905806	0.82[EUR][1000 genomes]
rs11256848	0.89[ASN][1000 genomes]
rs11256860	0.81[ASN][1000 genomes]
rs11256879	0.81[ASN][1000 genomes]
rs12220852	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571090	0.86[ASN][1000 genomes]
rs2274358	0.91[ASN][1000 genomes]
rs2274359	0.91[ASN][1000 genomes]
rs3930531	0.81[EUR][1000 genomes]
rs4747865	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749957	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7894037	0.86[ASN][1000 genomes]
rs7899110	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6130400-6132600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr10:6130400-6132600	Active TSS	Right Atrium	heart
3	chr10:6130400-6132800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr10:6130600-6132600	Active TSS	A549	lung
5	chr10:6130600-6132800	Active TSS	Rectal Smooth Muscle	rectum
6	chr10:6131000-6132600	Active TSS	Sigmoid Colon	Sigmoid Colon
7	chr10:6131000-6132800	Active TSS	Lung	lung
8	chr10:6131400-6132600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr10:6131400-6132800	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr10:6131400-6132800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:6131400-6132800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:6131600-6132800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr10:6131600-6132800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr10:6131600-6132800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr10:6131600-6132800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr10:6131600-6132800	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr10:6131600-6132800	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr10:6131600-6132800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr10:6131800-6132600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:6131800-6132600	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr10:6131800-6132600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:6131800-6132600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr10:6131800-6132600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:6131800-6132600	Flanking Active TSS	Liver	Liver
25	chr10:6131800-6132600	Flanking Active TSS	Brain Germinal Matrix	brain
26	chr10:6131800-6132600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr10:6131800-6132600	Flanking Active TSS	Colonic Mucosa	Colon
28	chr10:6131800-6132600	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr10:6131800-6132600	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr10:6131800-6132600	Flanking Active TSS	Fetal Stomach	stomach
31	chr10:6131800-6132600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr10:6131800-6132600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr10:6131800-6132800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr10:6131800-6132800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:6131800-6132800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:6131800-6132800	Flanking Active TSS	Brain Angular Gyrus	brain
37	chr10:6131800-6132800	Flanking Active TSS	Brain Substantia Nigra	brain
38	chr10:6131800-6132800	Flanking Active TSS	Fetal Brain Female	brain
39	chr10:6131800-6132800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr10:6131800-6132800	Flanking Active TSS	Hela-S3	cervix
41	chr10:6131800-6132800	Flanking Active TSS	NHEK	skin
42	chr10:6131800-6132800	Flanking Active TSS	Osteobl	bone
43	chr10:6132000-6132600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:6132000-6132600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
45	chr10:6132000-6132600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr10:6132000-6132600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr10:6132000-6132600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr10:6132000-6132600	Flanking Active TSS	Fetal Thymus	thymus
49	chr10:6132000-6132600	Flanking Active TSS	NH-A	brain
50	chr10:6132000-6132800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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