Variant report

Variant	rs4749957
Chromosome Location	chr10:6127975-6127976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6121462..6124119-chr10:6127226..6129947,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10905773	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11256667	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11256848	0.84[ASN][1000 genomes]
rs12220852	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12571090	0.82[ASN][1000 genomes]
rs2274358	0.86[ASN][1000 genomes]
rs2274359	0.86[ASN][1000 genomes]
rs4747865	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4749959	0.83[EUR][1000 genomes]
rs7894037	0.82[ASN][1000 genomes]
rs7899110	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6124600-6128200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr10:6124800-6128200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:6124800-6128200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:6124800-6131000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:6125600-6128200	Weak transcription	Brain Angular Gyrus	brain
6	chr10:6125600-6128200	Weak transcription	Right Ventricle	heart
7	chr10:6125800-6128200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:6125800-6128200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:6125800-6128200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:6126000-6128200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:6126000-6128200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:6126000-6128200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:6126000-6128200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:6126000-6128200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:6126000-6128200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:6126000-6128200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:6126000-6128200	Weak transcription	Gastric	stomach
18	chr10:6126000-6128200	Weak transcription	NH-A	brain
19	chr10:6126000-6128600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:6126000-6130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:6126000-6131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:6126200-6128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:6126200-6128200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:6126200-6128200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:6126200-6128200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:6126200-6128200	Weak transcription	Primary T cells from cord blood	blood
27	chr10:6126200-6128200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:6126200-6128200	Weak transcription	Ovary	ovary
29	chr10:6126200-6128200	Weak transcription	Pancreas	Pancrea
30	chr10:6126200-6128200	Weak transcription	Right Atrium	heart
31	chr10:6126200-6128200	Weak transcription	Small Intestine	intestine
32	chr10:6126200-6128200	Weak transcription	Thymus	Thymus
33	chr10:6126200-6128200	Weak transcription	HUVEC	blood vessel
34	chr10:6126200-6131000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:6126400-6128200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:6126400-6128200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:6126400-6128200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:6126400-6128200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:6126400-6128200	Weak transcription	Adipose Nuclei	Adipose
40	chr10:6126400-6128200	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:6126400-6128200	Weak transcription	Left Ventricle	heart
42	chr10:6126600-6128000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:6126600-6128000	Weak transcription	Fetal Stomach	stomach
44	chr10:6126600-6128200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:6126600-6128200	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr10:6126600-6128200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:6126600-6128200	Weak transcription	Fetal Thymus	thymus
48	chr10:6127000-6128000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:6127200-6129200	Enhancers	Primary T cells fromperipheralblood	blood
50	chr10:6127400-6128200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links