Variant report

Variant	rs1125727
Chromosome Location	chr7:137534627-137534628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137527969..137530649-chr7:137533553..137535061,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1020961	0.88[EUR][1000 genomes]
rs10235475	0.94[ASN][1000 genomes]
rs10244571	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11769577	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12531271	0.96[CEU][hapmap]
rs12669567	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1382397	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1478534	0.90[EUR][1000 genomes]
rs1478535	0.98[ASN][1000 genomes]
rs1564227	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2061794	0.94[ASN][1000 genomes]
rs2351858	0.95[CEU][hapmap];0.85[CHB][hapmap];0.92[EUR][1000 genomes]
rs4732272	0.94[ASN][1000 genomes]
rs4732273	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7783145	0.85[CHB][hapmap]
rs7795163	0.94[ASN][1000 genomes]
rs7801878	1.00[ASN][1000 genomes]
rs7809282	0.92[ASN][1000 genomes]
rs9640912	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9642083	0.94[ASN][1000 genomes]
rs9690988	0.98[ASN][1000 genomes]
rs9690995	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9757	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137532200-137556400	Weak transcription	Esophagus	oesophagus
2	chr7:137532400-137534800	Weak transcription	NHDF-Ad	bronchial
3	chr7:137532400-137534800	Weak transcription	NHLF	lung
4	chr7:137532400-137536000	Weak transcription	HSMM	muscle
5	chr7:137532400-137536600	Weak transcription	Right Atrium	heart
6	chr7:137532400-137545400	Weak transcription	Aorta	Aorta
7	chr7:137532400-137546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:137532400-137549800	Weak transcription	A549	lung
9	chr7:137532400-137552200	Weak transcription	Pancreas	Pancrea
10	chr7:137532600-137535400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:137532600-137535400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:137532600-137536200	Weak transcription	HSMMtube	muscle
13	chr7:137532600-137536400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:137532600-137547200	Weak transcription	Ovary	ovary
15	chr7:137532800-137534800	Weak transcription	NH-A	brain
16	chr7:137532800-137535000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:137532800-137535400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:137532800-137544200	Weak transcription	HepG2	liver
19	chr7:137532800-137546400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:137532800-137546600	Weak transcription	Adipose Nuclei	Adipose
21	chr7:137533000-137534800	Weak transcription	Osteobl	bone
22	chr7:137533000-137535400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:137533200-137534800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:137533200-137536200	Weak transcription	Placenta	Placenta
25	chr7:137533400-137535400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:137533600-137536800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:137533800-137545400	Weak transcription	HUVEC	blood vessel
28	chr7:137533800-137549400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr7:137533800-137551600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr7:137533800-137575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:137534000-137545600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:137534200-137536800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr7:137534200-137563000	Weak transcription	HMEC	breast
34	chr7:137534400-137535800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr7:137534600-137545400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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