Variant report

Variant	rs1564227
Chromosome Location	chr7:137537526-137537527
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137536944..137540273-chr7:137543012..137545622,3	MCF-7	breast:
2	chr7:137531491..137533916-chr7:137536479..137539866,3	K562	blood:
3	chr7:137531491..137536138-chr7:137536479..137540493,4	K562	blood:

Variant related genes	Relation type
ENSG00000157680	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10235475	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10244571	0.98[ASN][1000 genomes]
rs1125727	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11769577	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669567	0.94[ASN][1000 genomes]
rs1382397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1478535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2061794	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2351858	0.82[CHB][hapmap]
rs4732272	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4732273	0.94[ASN][1000 genomes]
rs6943538	0.84[YRI][hapmap]
rs7783145	0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs7795163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7801878	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809282	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9640912	0.88[ASN][1000 genomes]
rs9642083	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9690988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9690995	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137532200-137556400	Weak transcription	Esophagus	oesophagus
2	chr7:137532400-137545400	Weak transcription	Aorta	Aorta
3	chr7:137532400-137546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:137532400-137549800	Weak transcription	A549	lung
5	chr7:137532400-137552200	Weak transcription	Pancreas	Pancrea
6	chr7:137532600-137547200	Weak transcription	Ovary	ovary
7	chr7:137532800-137544200	Weak transcription	HepG2	liver
8	chr7:137532800-137546400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:137532800-137546600	Weak transcription	Adipose Nuclei	Adipose
10	chr7:137533800-137545400	Weak transcription	HUVEC	blood vessel
11	chr7:137533800-137549400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:137533800-137551600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:137533800-137575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:137534000-137545600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:137534200-137563000	Weak transcription	HMEC	breast
16	chr7:137534600-137545400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:137534800-137547800	Weak transcription	Left Ventricle	heart
18	chr7:137535000-137552000	Weak transcription	Psoas Muscle	Psoas
19	chr7:137535200-137538000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr7:137535200-137562600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:137535600-137547000	Weak transcription	NHLF	lung
22	chr7:137535800-137540200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:137535800-137545200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:137536000-137544200	Weak transcription	Fetal Muscle Leg	muscle
25	chr7:137536000-137547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:137536200-137541000	Strong transcription	Placenta	Placenta
27	chr7:137536200-137552000	Weak transcription	Gastric	stomach
28	chr7:137536200-137557800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:137536400-137538800	Genic enhancers	Osteobl	bone
30	chr7:137536800-137537600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:137536800-137541400	Strong transcription	HSMM	muscle
32	chr7:137536800-137549800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:137537000-137538600	Weak transcription	NHDF-Ad	bronchial
34	chr7:137537200-137537600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:137537200-137540200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:137537200-137544200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:137537200-137545400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:137537200-137545400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr7:137537200-137549800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr7:137537400-137538000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:137537400-137538600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:137537400-137540000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:137537400-137540000	Weak transcription	NH-A	brain
44	chr7:137537400-137544200	Weak transcription	HSMMtube	muscle
45	chr7:137537400-137550600	Weak transcription	GM12878-XiMat	blood
46	chr7:137537400-137559000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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