Variant report

Variant	rs11257712
Chromosome Location	chr10:6310582-6310583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6307724..6310599-chr10:6312671..6314788,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11257726	0.86[EUR][1000 genomes]
rs11257734	0.86[EUR][1000 genomes]
rs11257741	0.92[CEU][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs11257742	0.92[CEU][hapmap];0.96[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs11257767	0.85[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6278800-6312400	Weak transcription	Thymus	Thymus
2	chr10:6298000-6312400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:6298600-6311800	Weak transcription	Lung	lung
4	chr10:6300000-6315200	Weak transcription	Aorta	Aorta
5	chr10:6307200-6313200	Weak transcription	Gastric	stomach
6	chr10:6308200-6312400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:6308600-6310600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:6308600-6313000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:6308800-6313400	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:6309400-6311200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:6309400-6312600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:6309600-6311400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:6309600-6312600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:6309600-6317000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:6309600-6317000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:6309600-6317200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:6310200-6311200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:6310200-6311200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:6310200-6311200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:6310200-6311400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:6310200-6311600	Weak transcription	Primary B cells from cord blood	blood
22	chr10:6310200-6311600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:6310200-6311600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:6310200-6312000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:6310200-6312200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:6310200-6312200	Weak transcription	A549	lung
27	chr10:6310200-6312400	Weak transcription	Brain Anterior Caudate	brain
28	chr10:6310200-6312400	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:6310200-6312400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:6310200-6312600	Weak transcription	Brain Angular Gyrus	brain
31	chr10:6310200-6313000	Weak transcription	Stomach Mucosa	stomach
32	chr10:6310200-6313200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:6310200-6313200	Weak transcription	Fetal Intestine Small	intestine
34	chr10:6310400-6311400	Weak transcription	GM12878-XiMat	blood
35	chr10:6310400-6311600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:6310400-6312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:6310400-6313200	Weak transcription	Small Intestine	intestine
38	chr10:6310400-6315400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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