Variant report

Variant	rs11257742
Chromosome Location	chr10:6314822-6314823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6310906..6315323-chr10:6338181..6341379,4	MCF-7	breast:
2	chr10:6216278..6218150-chr10:6312920..6315721,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11257712	0.85[EUR][1000 genomes]
rs11257726	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11257734	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11257741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11257767	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6300000-6315200	Weak transcription	Aorta	Aorta
2	chr10:6309600-6317000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:6309600-6317000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:6309600-6317200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:6310400-6315400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:6312800-6315200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:6312800-6316000	Enhancers	Liver	Liver
8	chr10:6312800-6316400	Weak transcription	Primary B cells from cord blood	blood
9	chr10:6312800-6316600	Weak transcription	NHEK	skin
10	chr10:6312800-6316800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:6312800-6317000	Weak transcription	Spleen	Spleen
12	chr10:6313000-6315800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:6313200-6316400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:6313200-6316600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:6313200-6316800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:6313200-6316800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:6313400-6315200	Weak transcription	Fetal Lung	lung
18	chr10:6313400-6316400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:6313400-6316400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:6313400-6316600	Weak transcription	Small Intestine	intestine
21	chr10:6313400-6316800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:6313400-6317000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:6313400-6317200	Weak transcription	Fetal Intestine Small	intestine
24	chr10:6313400-6317200	Weak transcription	Thymus	Thymus
25	chr10:6313600-6316800	Weak transcription	HSMMtube	muscle
26	chr10:6313600-6317000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:6313600-6317000	Weak transcription	Fetal Thymus	thymus
28	chr10:6313800-6316800	Weak transcription	Brain Anterior Caudate	brain
29	chr10:6313800-6317000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:6313800-6317000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:6313800-6317000	Weak transcription	Primary T cells from cord blood	blood
32	chr10:6313800-6317000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:6313800-6317000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:6313800-6321000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:6314000-6316600	Weak transcription	HMEC	breast
36	chr10:6314000-6316800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:6314200-6315200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:6314200-6316600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:6314200-6316800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:6314200-6316800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:6314200-6316800	Weak transcription	GM12878-XiMat	blood
42	chr10:6314200-6317000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:6314200-6317000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:6314200-6317000	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:6314200-6317000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:6314200-6317000	Weak transcription	Esophagus	oesophagus
47	chr10:6314200-6317000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:6314200-6317000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:6314200-6317000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:6314400-6315600	Weak transcription	A549	lung

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