Variant report

Variant	rs112582308
Chromosome Location	chr10:44788834-44788835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-1	chr10:44788720-44789157	XLOC_008795
2	lnc-CXCL12-1	chr10:44788720-44789209	XLOC_008795
3	lnc-C10orf136-6	chr10:44788752-44789262	NONHSAT013029

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422728	chr10:44788646-44792944	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44787800-44789000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr10:44787800-44789000	Active TSS	Brain Angular Gyrus	brain
3	chr10:44787800-44789200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr10:44787800-44789200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr10:44787800-44789200	Active TSS	Brain Cingulate Gyrus	brain
6	chr10:44787800-44789200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:44787800-44789200	Bivalent Enhancer	Fetal Brain Male	brain
8	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
9	chr10:44787800-44791600	Enhancers	Ovary	ovary
10	chr10:44788000-44789000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr10:44788000-44789200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:44788000-44789200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr10:44788000-44789200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr10:44788000-44789400	Enhancers	Lung	lung
15	chr10:44788200-44789000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr10:44788200-44789200	Bivalent Enhancer	Placenta	Placenta
17	chr10:44788200-44790400	Weak transcription	Pancreas	Pancrea
18	chr10:44788200-44790600	Weak transcription	Spleen	Spleen
19	chr10:44788200-44791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:44788400-44789800	Enhancers	Fetal Kidney	kidney
21	chr10:44788600-44789000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:44788600-44789000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:44788600-44789000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
24	chr10:44788600-44789000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
25	chr10:44788600-44789000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
26	chr10:44788600-44789000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
27	chr10:44788600-44789000	Active TSS	NH-A	brain
28	chr10:44788600-44789200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:44788600-44789200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:44788600-44789200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr10:44788600-44789200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:44788600-44789200	Bivalent Enhancer	Liver	Liver
33	chr10:44788600-44789400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:44788600-44789400	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr10:44788600-44789400	Flanking Active TSS	Osteobl	bone
36	chr10:44788600-44789800	Enhancers	NHLF	lung
37	chr10:44788600-44791200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:44788600-44791600	Enhancers	NHDF-Ad	bronchial
39	chr10:44788800-44789000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:44788800-44789000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
41	chr10:44788800-44789000	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:44788800-44789000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:44788800-44789000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:44788800-44789000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:44788800-44789000	Active TSS	Brain Germinal Matrix	brain
46	chr10:44788800-44789000	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr10:44788800-44789000	Bivalent Enhancer	Colonic Mucosa	Colon
48	chr10:44788800-44789000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
49	chr10:44788800-44789000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr10:44788800-44789000	Bivalent Enhancer	Fetal Intestine Small	intestine

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