Variant report

Variant	esv3447098
Chromosome Location	chr10:44787696-44789544
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:367)
Chromatin interactive
region (count:0)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr10:44788804-44788974	GM12878	blood:	n/a	n/a
2	CEBPB	chr10:44789236-44789628	IMR90	lung:	n/a	n/a
3	CHD1	chr10:44788827-44788830	H1-hESC	embryonic stem cell:	n/a	n/a
4	CHD2	chr10:44788814-44788936	GM12878	blood:	n/a	n/a
5	CTCF	chr10:44788844-44788873	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr10:44787900-44788050	HBMEC	blood vessel:	n/a	n/a
7	CTCF	chr10:44787740-44787890	HRE	kidney:	n/a	n/a
8	CTCF	chr10:44788700-44788850	GM12873	blood:	n/a	n/a
9	EBF1	chr10:44788629-44789008	GM12878	blood:	n/a	n/a
10	EP300	chr10:44788681-44788924	GM12878	blood:	n/a	n/a
11	EP300	chr10:44788748-44788899	GM12878	blood:	n/a	n/a
12	GTF2F1	chr10:44788858-44788883	H1-hESC	embryonic stem cell:	n/a	n/a
13	HMGN3	chr10:44788148-44788217	K562	blood:	n/a	n/a
14	JUND	chr10:44788022-44788106	H1-hESC	embryonic stem cell:	n/a	n/a
15	MYC	chr10:44788779-44788781	GM12878	blood:	n/a	n/a
16	MYC	chr10:44788789-44788826	GM12878	blood:	n/a	n/a
17	POLR2A	chr10:44788910-44788919	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr10:44788993-44789163	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr10:44789239-44789708	U87	brain:	n/a	n/a
20	POLR2A	chr10:44787687-44788309	U87	brain:	n/a	n/a
21	POLR2A	chr10:44788814-44788829	Gliobla	brain:	n/a	n/a
22	POLR2A	chr10:44789249-44789681	U87	brain:	n/a	n/a
23	POLR2A	chr10:44787892-44787955	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr10:44788687-44789713	U87	brain:	n/a	n/a
25	POLR2A	chr10:44787693-44788309	U87	brain:	n/a	n/a
26	POLR2A	chr10:44788795-44788811	Gliobla	brain:	n/a	n/a
27	RUNX3	chr10:44788623-44789015	GM12878	blood:	n/a	n/a
28	RUNX3	chr10:44788657-44788975	GM12878	blood:	n/a	n/a
29	SPI1	chr10:44788639-44788942	GM12878	blood:	n/a	n/a
30	SPI1	chr10:44788681-44788829	K562	blood:	n/a	n/a
31	STAT3	chr10:44789407-44789567	MCF10A-Er-Src	breast:	n/a	chr10:44789525-44789533
32	STAT3	chr10:44789397-44789572	MCF10A-Er-Src	breast:	n/a	chr10:44789525-44789533
33	TBL1XR1	chr10:44788695-44788819	GM12878	blood:	n/a	n/a
34	TBP	chr10:44788999-44789155	H1-hESC	embryonic stem cell:	n/a	n/a
35	TCF12	chr10:44788708-44788928	GM12878	blood:	n/a	n/a
36	USF2	chr10:44788789-44788796	H1-hESC	embryonic stem cell:	n/a	n/a
37	WRNIP1	chr10:44788004-44788006	GM12878	blood:	n/a	n/a

(count:367 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:44789077-44789127	Hela-S3	cervix:	n/a
2	chr10:44789077-44789127	Hela-S3	cervix:	n/a
3	chr10:44788627-44788677	HAEpiC	amniotic membrane:	n/a
4	chr10:44788915-44788965	HEK293	kidney:	embryo
5	chr10:44788812-44788862	NB4	blood:	n/a
6	chr10:44788044-44788094	AG09309	skin:	n/a
7	chr10:44788044-44788094	AG04449	skin:	fetal
8	chr10:44788044-44788094	ECC-1	luminal epithelium:	n/a
9	chr10:44788887-44788937	ovcar-3	ovarian:	n/a
10	chr10:44788915-44788965	AG04450	lung:	fetal
11	chr10:44788887-44788937	Hepatocyte	liver:	n/a
12	chr10:44788887-44788937	GM12892	blood:	n/a
13	chr10:44788044-44788094	AG10803	skin:	n/a
14	chr10:44788915-44788965	RPTEC	kidney:	n/a
15	chr10:44789077-44789127	HepG2	liver:	n/a
16	chr10:44788627-44788677	HRE	kidney:	n/a
17	chr10:44789077-44789127	NH-A	brain:	n/a
18	chr10:44788627-44788677	HCPEpiC	choroid plexus:	n/a
19	chr10:44788044-44788094	CMK	blood:	n/a
20	chr10:44788887-44788937	RPTEC	kidney:	n/a
21	chr10:44788627-44788677	MCF10A-Er-Src	breast:	n/a
22	chr10:44789077-44789127	HCF	heart:	n/a
23	chr10:44788915-44788965	MCF-7	breast:	n/a
24	chr10:44788915-44788965	NB4	blood:	n/a
25	chr10:44788915-44788965	HNPCEpiC	eye:	n/a
26	chr10:44788627-44788677	GM19239	blood:	n/a
27	chr10:44788044-44788094	Hela-S3	cervix:	n/a
28	chr10:44789077-44789127	ProgFib	skin:	n/a
29	chr10:44788887-44788937	HAEpiC	amniotic membrane:	n/a
30	chr10:44788887-44788937	HepG2	liver:	n/a
31	chr10:44788812-44788862	ECC-1	luminal epithelium:	n/a
32	chr10:44788627-44788677	ECC-1	luminal epithelium:	n/a
33	chr10:44789077-44789127	BE2_C	brain:	n/a
34	chr10:44788044-44788094	H1-hESC	embryonic stem cell:	embryo
35	chr10:44788812-44788862	HCT-116	colon:	n/a
36	chr10:44788044-44788094	HEK293	kidney:	embryo
37	chr10:44789077-44789127	PANC-1	pancreas:	n/a
38	chr10:44788627-44788677	SAEC	small airway:	n/a
39	chr10:44789077-44789127	K562	blood:	n/a
40	chr10:44788044-44788094	PANC-1	pancreas:	n/a
41	chr10:44788627-44788677	AoSMC	blood vessel:	n/a
42	chr10:44788915-44788965	A549	lung:	n/a
43	chr10:44788915-44788965	NT2-D1	testis:	n/a
44	chr10:44788812-44788862	AG04449	skin:	fetal
45	chr10:44788044-44788094	HAEpiC	amniotic membrane:	n/a
46	chr10:44789077-44789127	HMEC	breast:	n/a
47	chr10:44788915-44788965	GM12878	blood:	n/a
48	chr10:44788044-44788094	NB4	blood:	n/a
49	chr10:44789077-44789127	RPTEC	kidney:	n/a
50	chr10:44788812-44788862	HCM	heart:	n/a

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf136-6	chr10:44788752-44789262	NONHSAT013029
2	lnc-C10orf136-6	chr10:44787919-44788003	NONHSAT013029
3	lnc-CXCL12-1	chr10:44787706-44788182	XLOC_008795
4	lnc-CXCL12-1	chr10:44788720-44789157	XLOC_008795
5	lnc-CXCL12-1	chr10:44787546-44788182	XLOC_008795
6	lnc-CXCL12-1	chr10:44788720-44789209	XLOC_008795
7	lnc-CXCL12-1	chr10:44789285-44789628	XLOC_008795

No data

Variant related genes	Relation type
ENSG00000229116	TF binding region
ENSG00000229116	CpG island

Extended variants
information (count: 73 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372988868	chr10:44787696-44787697	Enhancers Weak transcription Bivalent Enhancer Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
2	rs185989939	chr10:44787698-44787699	Enhancers Weak transcription Bivalent Enhancer Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs555065639	chr10:44787773-44787774	Enhancers Weak transcription Bivalent Enhancer Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
4	rs535950255	chr10:44787824-44787825	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs138743253	chr10:44787832-44787833	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs549239515	chr10:44787856-44787857	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs56401243	chr10:44787873-44787874	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs541290719	chr10:44787894-44787895	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs553626846	chr10:44787913-44787914	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs578216961	chr10:44787939-44787940	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs372596070	chr10:44787967-44787968	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs373683127	chr10:44787989-44787990	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs545691500	chr10:44788023-44788024	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
14	rs115718769	chr10:44788084-44788085	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs530948303	chr10:44788092-44788093	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs543111396	chr10:44788135-44788136	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs575943616	chr10:44788138-44788139	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs79646241	chr10:44788211-44788212	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
19	rs544424594	chr10:44788266-44788267	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
20	rs572085659	chr10:44788267-44788268	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
21	rs545727219	chr10:44788268-44788269	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
22	rs547324430	chr10:44788272-44788273	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
23	rs565955531	chr10:44788282-44788283	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
24	rs532095723	chr10:44788310-44788311	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
25	rs551658440	chr10:44788311-44788312	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
26	rs534603842	chr10:44788322-44788323	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
27	rs569283063	chr10:44788356-44788357	Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
28	rs2576350	chr10:44788440-44788441	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
29	rs536681748	chr10:44788449-44788450	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
30	rs60254650	chr10:44788486-44788487	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
31	rs555021514	chr10:44788496-44788497	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
32	rs567069765	chr10:44788587-44788588	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
33	rs535209835	chr10:44788629-44788630	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs368112017	chr10:44788705-44788706	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs78550452	chr10:44788714-44788715	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190399365	chr10:44788717-44788718	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571973984	chr10:44788719-44788720	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs73286694	chr10:44788758-44788759	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs557699960	chr10:44788777-44788778	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs58189594	chr10:44788826-44788827	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs112582308	chr10:44788834-44788835	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs140407264	chr10:44788837-44788838	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs183443274	chr10:44788888-44788889	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs528621679	chr10:44788898-44788899	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs145407268	chr10:44788917-44788918	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs138014076	chr10:44788954-44788955	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs370275316	chr10:44788959-44788960	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs367662703	chr10:44789005-44789006	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
49	rs551228152	chr10:44789025-44789026	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
50	rs563271470	chr10:44789055-44789056	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:233 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
2	chr10:44779400-44787800	Weak transcription	Brain Germinal Matrix	brain
3	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
4	chr10:44782000-44787800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:44783200-44787800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:44783200-44788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:44783600-44787800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:44783800-44787800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:44784800-44788600	Weak transcription	Left Ventricle	heart
11	chr10:44785000-44787800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:44785000-44788800	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:44785600-44788600	Weak transcription	Osteobl	bone
14	chr10:44786400-44787800	Enhancers	Fetal Stomach	stomach
15	chr10:44786600-44788200	Enhancers	Fetal Kidney	kidney
16	chr10:44786600-44788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:44786800-44787800	Weak transcription	Ovary	ovary
18	chr10:44787000-44788600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:44787000-44788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:44787600-44787800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:44787600-44787800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr10:44787600-44787800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr10:44787600-44787800	Enhancers	Brain Angular Gyrus	brain
24	chr10:44787600-44787800	Enhancers	Brain Hippocampus Middle	brain
25	chr10:44787600-44787800	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:44787600-44787800	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:44787600-44788000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:44787600-44788000	Weak transcription	Lung	lung
29	chr10:44787800-44788000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:44787800-44788000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:44787800-44788000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr10:44787800-44788000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
33	chr10:44787800-44788000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr10:44787800-44788000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:44787800-44788000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr10:44787800-44788000	Enhancers	Esophagus	oesophagus
37	chr10:44787800-44788000	Bivalent Enhancer	Fetal Intestine Small	intestine
38	chr10:44787800-44788000	Bivalent Enhancer	Rectal Smooth Muscle	rectum
39	chr10:44787800-44788200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr10:44787800-44788200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
41	chr10:44787800-44788200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:44787800-44788200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
43	chr10:44787800-44788200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr10:44787800-44788200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr10:44787800-44788200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:44787800-44788200	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr10:44787800-44788200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr10:44787800-44788200	Enhancers	Spleen	Spleen
49	chr10:44787800-44788200	Enhancers	GM12878-XiMat	blood
50	chr10:44787800-44788400	Flanking Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links