Variant report

Variant	rs115718769
Chromosome Location	chr10:44788084-44788085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-1	chr10:44787706-44788182	XLOC_008795
2	lnc-CXCL12-1	chr10:44787546-44788182	XLOC_008795

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
2	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:44783200-44788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:44784800-44788600	Weak transcription	Left Ventricle	heart
5	chr10:44785000-44788800	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:44785600-44788600	Weak transcription	Osteobl	bone
7	chr10:44786600-44788200	Enhancers	Fetal Kidney	kidney
8	chr10:44786600-44788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:44787000-44788600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:44787000-44788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44787800-44788200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr10:44787800-44788200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr10:44787800-44788200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:44787800-44788200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
15	chr10:44787800-44788200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:44787800-44788200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:44787800-44788200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:44787800-44788200	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr10:44787800-44788200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr10:44787800-44788200	Enhancers	Spleen	Spleen
21	chr10:44787800-44788200	Enhancers	GM12878-XiMat	blood
22	chr10:44787800-44788400	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr10:44787800-44788600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:44787800-44788600	Bivalent Enhancer	Fetal Stomach	stomach
25	chr10:44787800-44788800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:44787800-44788800	Active TSS	Brain Anterior Caudate	brain
27	chr10:44787800-44788800	Active TSS	Brain Substantia Nigra	brain
28	chr10:44787800-44789000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr10:44787800-44789000	Active TSS	Brain Angular Gyrus	brain
30	chr10:44787800-44789200	Active TSS	H9 Cell Line	embryonic stem cell
31	chr10:44787800-44789200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr10:44787800-44789200	Active TSS	Brain Cingulate Gyrus	brain
33	chr10:44787800-44789200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:44787800-44789200	Bivalent Enhancer	Fetal Brain Male	brain
35	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
36	chr10:44787800-44791600	Enhancers	Ovary	ovary
37	chr10:44788000-44788200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:44788000-44788200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
39	chr10:44788000-44788200	ZNF genes & repeats	Pancreas	Pancrea
40	chr10:44788000-44788400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:44788000-44788400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:44788000-44788400	Bivalent/Poised TSS	Fetal Brain Female	brain
43	chr10:44788000-44788600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:44788000-44788600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:44788000-44788600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:44788000-44788600	Enhancers	Adipose Nuclei	Adipose
47	chr10:44788000-44788600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
48	chr10:44788000-44788800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:44788000-44788800	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr10:44788000-44788800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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