Variant report

Variant	rs56401243
Chromosome Location	chr10:44787873-44787874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-1	chr10:44787706-44788182	XLOC_008795
2	lnc-CXCL12-1	chr10:44787546-44788182	XLOC_008795

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
2	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
3	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:44783200-44788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:44784800-44788600	Weak transcription	Left Ventricle	heart
6	chr10:44785000-44788800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:44785600-44788600	Weak transcription	Osteobl	bone
8	chr10:44786600-44788200	Enhancers	Fetal Kidney	kidney
9	chr10:44786600-44788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:44787000-44788600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:44787000-44788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44787600-44788000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:44787600-44788000	Weak transcription	Lung	lung
14	chr10:44787800-44788000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:44787800-44788000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:44787800-44788000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
17	chr10:44787800-44788000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
18	chr10:44787800-44788000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr10:44787800-44788000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:44787800-44788000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr10:44787800-44788000	Enhancers	Esophagus	oesophagus
22	chr10:44787800-44788000	Bivalent Enhancer	Fetal Intestine Small	intestine
23	chr10:44787800-44788000	Bivalent Enhancer	Rectal Smooth Muscle	rectum
24	chr10:44787800-44788200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr10:44787800-44788200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
26	chr10:44787800-44788200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:44787800-44788200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
28	chr10:44787800-44788200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:44787800-44788200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:44787800-44788200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:44787800-44788200	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr10:44787800-44788200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr10:44787800-44788200	Enhancers	Spleen	Spleen
34	chr10:44787800-44788200	Enhancers	GM12878-XiMat	blood
35	chr10:44787800-44788400	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr10:44787800-44788600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:44787800-44788600	Bivalent Enhancer	Fetal Stomach	stomach
38	chr10:44787800-44788800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:44787800-44788800	Active TSS	Brain Anterior Caudate	brain
40	chr10:44787800-44788800	Active TSS	Brain Substantia Nigra	brain
41	chr10:44787800-44789000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
42	chr10:44787800-44789000	Active TSS	Brain Angular Gyrus	brain
43	chr10:44787800-44789200	Active TSS	H9 Cell Line	embryonic stem cell
44	chr10:44787800-44789200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
45	chr10:44787800-44789200	Active TSS	Brain Cingulate Gyrus	brain
46	chr10:44787800-44789200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:44787800-44789200	Bivalent Enhancer	Fetal Brain Male	brain
48	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
49	chr10:44787800-44791600	Enhancers	Ovary	ovary

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