Variant report

Variant	rs571973984
Chromosome Location	chr10:44788719-44788720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422728	chr10:44788646-44792944	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:44785000-44788800	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:44787800-44788800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44787800-44788800	Active TSS	Brain Anterior Caudate	brain
5	chr10:44787800-44788800	Active TSS	Brain Substantia Nigra	brain
6	chr10:44787800-44789000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr10:44787800-44789000	Active TSS	Brain Angular Gyrus	brain
8	chr10:44787800-44789200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr10:44787800-44789200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:44787800-44789200	Active TSS	Brain Cingulate Gyrus	brain
11	chr10:44787800-44789200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:44787800-44789200	Bivalent Enhancer	Fetal Brain Male	brain
13	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
14	chr10:44787800-44791600	Enhancers	Ovary	ovary
15	chr10:44788000-44788800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:44788000-44788800	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr10:44788000-44788800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:44788000-44789000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr10:44788000-44789200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:44788000-44789200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr10:44788000-44789200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr10:44788000-44789400	Enhancers	Lung	lung
23	chr10:44788200-44788800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr10:44788200-44788800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:44788200-44788800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:44788200-44788800	Active TSS	Brain Hippocampus Middle	brain
27	chr10:44788200-44788800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
28	chr10:44788200-44788800	Active TSS	Right Atrium	heart
29	chr10:44788200-44789000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr10:44788200-44789200	Bivalent Enhancer	Placenta	Placenta
31	chr10:44788200-44790400	Weak transcription	Pancreas	Pancrea
32	chr10:44788200-44790600	Weak transcription	Spleen	Spleen
33	chr10:44788200-44791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:44788400-44788800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:44788400-44788800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr10:44788400-44788800	Active TSS	Fetal Brain Female	brain
37	chr10:44788400-44789800	Enhancers	Fetal Kidney	kidney
38	chr10:44788600-44788800	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr10:44788600-44788800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:44788600-44788800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:44788600-44788800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:44788600-44788800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:44788600-44788800	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr10:44788600-44788800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
45	chr10:44788600-44788800	Active TSS	Left Ventricle	heart
46	chr10:44788600-44788800	Active TSS	Right Ventricle	heart
47	chr10:44788600-44788800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
48	chr10:44788600-44788800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:44788600-44788800	Active TSS	Stomach Smooth Muscle	stomach
50	chr10:44788600-44788800	Active TSS	GM12878-XiMat	blood

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