Variant report

Variant	rs2576350
Chromosome Location	chr10:44788440-44788441
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44783000-44788800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:44783200-44788600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:44784800-44788600	Weak transcription	Left Ventricle	heart
4	chr10:44785000-44788800	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:44785600-44788600	Weak transcription	Osteobl	bone
6	chr10:44786600-44788600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44787000-44788600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:44787000-44788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44787800-44788600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:44787800-44788600	Bivalent Enhancer	Fetal Stomach	stomach
11	chr10:44787800-44788800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:44787800-44788800	Active TSS	Brain Anterior Caudate	brain
13	chr10:44787800-44788800	Active TSS	Brain Substantia Nigra	brain
14	chr10:44787800-44789000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr10:44787800-44789000	Active TSS	Brain Angular Gyrus	brain
16	chr10:44787800-44789200	Active TSS	H9 Cell Line	embryonic stem cell
17	chr10:44787800-44789200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr10:44787800-44789200	Active TSS	Brain Cingulate Gyrus	brain
19	chr10:44787800-44789200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:44787800-44789200	Bivalent Enhancer	Fetal Brain Male	brain
21	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
22	chr10:44787800-44791600	Enhancers	Ovary	ovary
23	chr10:44788000-44788600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:44788000-44788600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:44788000-44788600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:44788000-44788600	Enhancers	Adipose Nuclei	Adipose
27	chr10:44788000-44788600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr10:44788000-44788800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:44788000-44788800	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr10:44788000-44788800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:44788000-44789000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr10:44788000-44789200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:44788000-44789200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
34	chr10:44788000-44789200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr10:44788000-44789400	Enhancers	Lung	lung
36	chr10:44788200-44788600	Weak transcription	GM12878-XiMat	blood
37	chr10:44788200-44788800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr10:44788200-44788800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:44788200-44788800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:44788200-44788800	Active TSS	Brain Hippocampus Middle	brain
41	chr10:44788200-44788800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
42	chr10:44788200-44788800	Active TSS	Right Atrium	heart
43	chr10:44788200-44789000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
44	chr10:44788200-44789200	Bivalent Enhancer	Placenta	Placenta
45	chr10:44788200-44790400	Weak transcription	Pancreas	Pancrea
46	chr10:44788200-44790600	Weak transcription	Spleen	Spleen
47	chr10:44788200-44791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:44788400-44788600	Active TSS	Brain Germinal Matrix	brain
49	chr10:44788400-44788800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:44788400-44788800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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