Variant report

Variant	rs11259406
Chromosome Location	chr10:6572560-6572561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6572483..6574395-chr10:6574703..6577680,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11259387	0.86[ASN][1000 genomes]
rs11259545	0.93[EUR][1000 genomes]
rs56810982	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6557400-6582400	Weak transcription	Dnd41	blood
2	chr10:6558800-6579400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:6562800-6580000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:6563000-6579200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:6568000-6581200	Weak transcription	K562	blood
6	chr10:6568800-6581200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:6569200-6577600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:6569200-6578200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:6569400-6579200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:6569600-6575200	Enhancers	Fetal Thymus	thymus
11	chr10:6571400-6573400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr10:6571400-6592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:6571600-6572800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr10:6571600-6573000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr10:6571800-6573000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr10:6571800-6573200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr10:6571800-6573800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:6572000-6572800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr10:6572000-6573000	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr10:6572000-6574200	Genic enhancers	Thymus	Thymus
21	chr10:6572000-6584600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:6572200-6572600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:6572200-6572800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:6572200-6573800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:6572200-6579400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:6572400-6572800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:6572400-6572800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:6572400-6572800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:6572400-6573000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr10:6572400-6573000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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