Variant report

Variant	rs11259531
Chromosome Location	chr10:6595558-6595559
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10906712	1.00[AFR][1000 genomes]
rs11259211	1.00[AFR][1000 genomes]
rs11259245	1.00[AFR][1000 genomes]
rs11259372	0.86[AFR][1000 genomes]
rs4748099	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6587800-6603600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:6587800-6604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:6588000-6596000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:6588400-6596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:6588400-6596400	Weak transcription	Fetal Thymus	thymus
6	chr10:6588400-6597800	Weak transcription	Thymus	Thymus
7	chr10:6588600-6599000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:6588600-6599200	Weak transcription	Primary T cells from cord blood	blood
9	chr10:6591200-6597800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:6591400-6597800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:6591400-6599600	Weak transcription	Dnd41	blood
12	chr10:6593600-6599400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:6593800-6597800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:6593800-6597800	Weak transcription	Pancreas	Pancrea
15	chr10:6593800-6599600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:6594400-6598000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:6594600-6596000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:6594600-6596000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:6595000-6602400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:6595200-6596000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:6595200-6596200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:6595200-6596400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:6595400-6596000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:6595400-6605000	Enhancers	Primary T helper cells fromperipheralblood	blood

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