Variant report

Variant	rs11259963
Chromosome Location	chr15:83641353-83641354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1037403	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2046070	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2061947	0.84[AMR][1000 genomes]
rs2123157	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2123158	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2167602	0.93[ASN][1000 genomes]
rs2381028	0.93[ASN][1000 genomes]
rs28451607	0.94[ASN][1000 genomes]
rs28510273	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4842859	0.88[ASN][1000 genomes]
rs4842928	0.89[ASN][1000 genomes]
rs4842935	0.93[ASN][1000 genomes]
rs59108707	0.84[ASN][1000 genomes]
rs6603038	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6603041	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8025253	0.95[ASN][1000 genomes]
rs8034220	0.82[ASN][1000 genomes]
rs8043020	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83622200-83649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83635600-83653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:83635800-83654000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:83637800-83642000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr15:83639800-83641600	Weak transcription	Osteobl	bone
6	chr15:83639800-83641800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:83640000-83642400	Enhancers	Liver	Liver
8	chr15:83640200-83641800	Weak transcription	HSMM	muscle
9	chr15:83640200-83654000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:83640600-83641800	Weak transcription	Pancreas	Pancrea
11	chr15:83640600-83654000	Weak transcription	HSMMtube	muscle
12	chr15:83640800-83654000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:83641200-83653800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:83641200-83654200	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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